Protein Info for BACOVA_04504 in Bacteroides ovatus ATCC 8483

Annotation: SusD family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 585 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF14322: SusD-like_3" amino acids 23 to 226 (204 residues), 52.8 bits, see alignment E=6.5e-18 PF07980: SusD_RagB" amino acids 284 to 581 (298 residues), 145.9 bits, see alignment E=2.2e-46

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (585 amino acids)

>BACOVA_04504 SusD family protein (Bacteroides ovatus ATCC 8483)
MKLKYIFAVGVMALLASCDESRFLDIKPQGTLNDDLLSSADGVELLVTSAYAGLKGPNRD
MHWVPMTNWTYGEVRSDNAYKGGGGVNDGDFCTLLETFKIDATWGNADEKWFQLYCCLQR
CNSALRVMNTLDENALPMIKSRKAEMKVIRAHFFFELVRLFKQVPYFDENVENDDYKYIP
NNQFTREELLGKIAQEFLDAANDLPDTQSQVGRVTKNIAYAYAAKARLYQAYRQDDNNQV
VAIDKQLLAEVVTLCDKVGAQGKAYTLLNDFQKLDQLEYENGVESVFAVQYSMDDETDGA
GNINWSNLLNAPKGPYGGDGFFLPSQNLINAYKTDNYGLPLFDTFNADDYGIYEGSELTN
IDATVDPRLDFVTGRPGITWKTYTVEPCKANWIRNSGEYGFNCTKRFYISPESEDMFQGW
PWGASHLNWQIIRYADVLLWKAEALIEIGEATGLEEARKIINRIRLRAKNSPYVKDFEHS
EQDAANYLIGEYPAEGWSQDFARKALRWERRMEFAMEGDRFFDLVRWGIAAETMNSYISV
EQNKRVYYRGARFVRGRDEYLPIPNAQYNFSEGNYVQNPGYGKFN