Protein Info for BACOVA_04479 in Bacteroides ovatus ATCC 8483

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 993 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 24 to 993 (970 residues), 649.4 bits, see alignment E=1.3e-198 PF07715: Plug" amino acids 111 to 214 (104 residues), 47.1 bits, see alignment E=1.5e-16 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 190 to 220 (31 residues), 52.2 bits, see alignment (E = 4.1e-18)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (993 amino acids)

>BACOVA_04479 TonB-linked outer membrane protein, SusC/RagA family (Bacteroides ovatus ATCC 8483)
MNKLLFTIGMLFISSVSLVAQEMMNGIVKDGSGKPLSGVKVSKVGEYRNNNVTDEDGLFS
LLLKKGDYIELNYADVATKRIKITGDTLNLVFDIKKDAVVDLGFLKRTEDTQTQSVTAIY
ADLLEKNATSPDRVNNALFGLISGLHLSQTVGWDANAGMNIRGRGGLGSGAPLVLVDGFE
RGLTNMTIEEIESVQVLKDGAATALMGARGANGVILVNTKRGIYNSFDVDVNYRHGFDFP
VNRPEMADAYTYAMAQNEALYYDGLPLQYTKRDLERFKDGTNPNYYPNVNWYKEGTRNFS
ENNQFNVMMRGGGKRVRYMALLDYKNKFGLLNEDYTHYSDRYNSQIRTYELGLRMNLDVD
ITSSTRMKFGLYGIIGEDKRPNTDINTIFQNFYKVPAAAFPVKTLNNNWGSNTLFKMNPI
AAIADVGYVQENRRMLETDMRITQDFSMFLKGLSAEVAVAYDNTATFQDIGSKTYKYEVG
YLSEEGLPVSETYGTDSKVQITKSVLSAQLIRASVEAKLNYDYTSGKHQLSASAVYRQDM
KEPLENNASYYRQNIMGFVGYNYGNRYMVDVVGNYYGTSVLLKGDKFRFYPAVSAGWNLA
NEDFLKGASNLDLLKLRASWGRSAVDELDYGLGNYFWTGGTGYPFGDGMTVVNGLKEQRL
PVYGLNLETADKYNVGVDLRLWKNFTATAEVYYDHRTNILVANNNVSGILGIDPPKACIG
EVKSRGVELSLGWSGQHKDFNYFVNANWALNDSEIVENGQAYQPYDYLYTRGHKVGQLFG
LEAVGYFRDEEDIAKSPEQTFSVVRPGDVKYKDQNGDGRIDSEDRIAIGKSTTVPEMVFG
LNLGFEYKGFGIDMVFNGVSGLTKQLNVANVHQPLRNGNTNIATWYLKDKIRWTEAMKDV
ANVPRLSTLSNENNYQTSTQWIEDGSFLKLRNLNVYYNLPQKWVKKIKLDKLQIYAKAQN
VFSIDKIDYFNCEDLTLGYPDLFSVCLGLNINF