Protein Info for BACOVA_04053 in Bacteroides ovatus ATCC 8483

Annotation: oligopeptide transporter, OPT family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 662 transmembrane" amino acids 38 to 61 (24 residues), see Phobius details amino acids 67 to 85 (19 residues), see Phobius details amino acids 96 to 120 (25 residues), see Phobius details amino acids 132 to 152 (21 residues), see Phobius details amino acids 190 to 211 (22 residues), see Phobius details amino acids 231 to 249 (19 residues), see Phobius details amino acids 255 to 275 (21 residues), see Phobius details amino acids 302 to 321 (20 residues), see Phobius details amino acids 356 to 377 (22 residues), see Phobius details amino acids 387 to 410 (24 residues), see Phobius details amino acids 418 to 437 (20 residues), see Phobius details amino acids 443 to 464 (22 residues), see Phobius details amino acids 485 to 502 (18 residues), see Phobius details amino acids 536 to 581 (46 residues), see Phobius details amino acids 602 to 624 (23 residues), see Phobius details amino acids 637 to 655 (19 residues), see Phobius details TIGR00728: oligopeptide transporter, OPT superfamily" amino acids 36 to 618 (583 residues), 140.6 bits, see alignment E=7.2e-45 PF03169: OPT" amino acids 37 to 621 (585 residues), 379 bits, see alignment E=2.6e-117 TIGR00733: oligopeptide transporter, OPT family" amino acids 38 to 620 (583 residues), 230 bits, see alignment E=5.2e-72

Best Hits

KEGG orthology group: None (inferred from 96% identity to bth:BT_1086)

Predicted SEED Role

"Oligopeptide transporter, OPT family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (662 amino acids)

>BACOVA_04053 oligopeptide transporter, OPT family (Bacteroides ovatus ATCC 8483)
MKQEEDKFTGLPENAFRELKPGEVYNPLMGPSKNYPEVNIWSVAWGIAMAILFSAAAAYL
GLKVGQVFEAAIPIAIIAVGVSGAAKRKNALGENVIIQSIGACSGVIVAGAIFTLPALYI
LQAKYPEMTVTFMQVFISSLLGGVLGILFLIPFRKYFVSDMHGKYPFPEATATTQVLISG
EKGGSQAKPLLMAGMIGGLYDFIVATFGWWNENFTTRVCSAGEMLAEKAKLVFKVNTGAA
VLGLGYIVGLKYASIICAGSLAVWWIIIPGMSAIWGDSVLNAWNPEITSTVGMMSPEEIF
KYYAKSIGIGGIAMAGVIGIIRSWSIIKSAVGLAAKEMGGKGNVEKSIIRTQRDLSMKII
AIGSIITLILIVLFFYLDVMQGNLLHTLVAIVLVAGISFLFTTVAANAIAIVGTNPVSGM
TLMTLILASVVMVAVGLKGPSGMVAALVMGGVVCTALSMAGGFITDLKIGYWLGSTPAKQ
ETWKFLGTIVSAATVGGVMIILNKTYGFTSGALAAPQANAMAAVIEPLMSGVGAPWLLYG
IGAVLAIILTLCKIPALAFALGMFIPLELNVPLVVGGAVNWFVTTRSKDASLNTERGEKG
TLLASGFIAGGALMGVISAAMRFGGINLVNEAWLNNTWSEVLALGAYALLILYFIKASMK
VK