Protein Info for BACOVA_03866 in Bacteroides ovatus ATCC 8483

Annotation: IS66 family element, transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 592 PF03050: DDE_Tnp_IS66" amino acids 257 to 542 (286 residues), 203.5 bits, see alignment E=5e-64 PF13817: DDE_Tnp_IS66_C" amino acids 549 to 585 (37 residues), 41.1 bits, see alignment 1.7e-14

Best Hits

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (592 amino acids)

>BACOVA_03866 IS66 family element, transposase (Bacteroides ovatus ATCC 8483)
MIDERAYELLCCQLGLANEEKAGLRKQNKELIARLESIEESNRENSKNLIDTINDLKDTI
EKQSTTVEHYRKEMELMRKQLEAKDEVNRMLANEISNLRLQLEDSRKHRFGRTSEQRRLL
NNRNLDKSALEQSEYDGSDRKDDNNKTDDNETGSNTSSGNIPAQNSKPSRRKETAPRAGK
TKLKVDKVVVHEVDEYYTLPEGGRFMNRNGMPDVWEYRVIEHVRAYNVEHVYKVARVKLA
DGTFTSTMEHPLKNLGGIFSPELLARLLCLKYDFSMPENRQIRLLAREGIHISNTTLNSY
IHNGIAKLREFMEDVFKEFVQRANYLMVDETTELVGVETKEGKAYRRKYLWAFFAKHIKM
VYYHYNNGSRSSDAAKSFLEYFMGTISTDGYTVYRMFDGDDSKVLHIGCWTHCRRLWVDA
LPSDRTAMDIIDPIGEMFRNEDLFRMMKLSGEQIKERRLKLTGPILERIHHKVVIMMQDA
KIMANELMRKAVNYTINQWKSLRNILKDGSAEISNNLCEQRMKPVKLLLKNCMNVGSEDA
AENSAFTFSLIESCKLNGIDPQNYLKHLFECILHGKDCDKKALLPCFYKPEC