Protein Info for BACOVA_03702 in Bacteroides ovatus ATCC 8483

Annotation: YbaK/EbsC protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 181 TIGR00011: Cys-tRNA(Pro) deacylase" amino acids 28 to 178 (151 residues), 203.4 bits, see alignment E=7.9e-65 PF04073: tRNA_edit" amino acids 54 to 169 (116 residues), 92.3 bits, see alignment E=1.2e-30

Best Hits

Swiss-Prot: 51% identical to EBSC_ENTFA: Putative Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase EbsC (EF_1730) from Enterococcus faecalis (strain ATCC 700802 / V583)

KEGG orthology group: K03976, putative transcription regulator (inferred from 96% identity to bth:BT_0579)

Predicted SEED Role

"Cys-tRNA(Pro) deacylase YbaK"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (181 amino acids)

>BACOVA_03702 YbaK/EbsC protein (Bacteroides ovatus ATCC 8483)
MSWHLSYHILYLSDIELINTTKMKINKTNAARLLDKAKIAYELIPYEVDENDLSAVHVAA
SLGENIEQVFKTLVLHGDKSGYFVCVIPGEHEVDLKLAAKASGNKKCELIPVKELLPLTG
YIRGGCSPIGMKKHFPTYIHETSQQFPYIYVSAGVRGLQIKIAPEDLIRESRAEICRLFE
E