Protein Info for BACOVA_03601 in Bacteroides ovatus ATCC 8483

Annotation: rhamnulokinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 486 PF00370: FGGY_N" amino acids 7 to 243 (237 residues), 106.3 bits, see alignment E=2e-34 TIGR02627: rhamnulokinase" amino acids 7 to 462 (456 residues), 543.8 bits, see alignment E=1.4e-167 PF02782: FGGY_C" amino acids 255 to 443 (189 residues), 150.6 bits, see alignment E=5.1e-48

Best Hits

Swiss-Prot: 93% identical to RHAB_BACTN: Rhamnulokinase (rhaB) from Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)

KEGG orthology group: K00848, rhamnulokinase [EC: 2.7.1.5] (inferred from 93% identity to bth:BT_3763)

Predicted SEED Role

"Rhamnulokinase (EC 2.7.1.5)" in subsystem L-rhamnose utilization (EC 2.7.1.5)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.7.1.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (486 amino acids)

>BACOVA_03601 rhamnulokinase (Bacteroides ovatus ATCC 8483)
MKQNFFAVDLGATSGRTILGTFIEGGLNLEEINRFPNHLVEVGGHFYWDIYALYRHILDG
LKLVAHRGESIASIGIDTWGVDFVCVGKDGNLLRQPYAYRDPHTVGAPEALFSRISRSKV
YGKTGIQIMNFNSLFQLDTLRRNHDSALEAADKILFMPDALSYMLTGEMVTEYTIASTAQ
LVNAQTRRLEPELLKAVGLSEKNFGRFVFPGEKVGVLTEEVQKITGLGAIPVIAVAGHDT
GSAVAAVPALDRNFAYLSSGTWSLMGVETDAPVINAETEALNFTNEGGVEGTIRLLKNIC
GMWLLERCRLNWGDTSYPELISEADACEPFRSLINPDDDCFANPADMEKAITEYCRATGQ
SVPEKRGQVVRCIFESLALRYRQVLENLRSLSPRPIETLHVIGGGSRNDLLNQFTANAIG
IPVVAGPSEATAIGNVMIQAMAAGEATDVAGMRQLINRSIPLKTYQPQDTEVWDAAYIHF
KNCVRK