Protein Info for BACOVA_03576 in Bacteroides ovatus ATCC 8483

Annotation: Pectinesterase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 539 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF13205: Big_5" amino acids 35 to 127 (93 residues), 42.5 bits, see alignment E=1.4e-14 PF01095: Pectinesterase" amino acids 140 to 424 (285 residues), 125.5 bits, see alignment E=2.9e-40 PF12708: Pectate_lyase_3" amino acids 144 to 355 (212 residues), 27 bits, see alignment E=5.5e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (539 amino acids)

>BACOVA_03576 Pectinesterase (Bacteroides ovatus ATCC 8483)
MKAHLFSKMSQGLLLLSALLATSCKESSNNFFVPDHEAPSLVSVTPANGETAEENNTILL
TFNEYVKAGEGKANFNGEEVELTFKGKTASYAYTALDYNQACQFSLPKGAVIDFQGNVFE
GVSIQFTIRERPQPEARIFDAVVSPDGKGNYTSIQKAIDNVPSKRTEPWLIFVANGTYEE
QIIIPEDKPYIHLIGQDVDKTIVKLRINSSTEASATDPDVWKYSYKNLGKTEAAMVSVKA
TDFYAENISFVNGYGKELQKGPMALAMYTQNDRNSFNNCKFLSYQDTWQTGPKSDNGRLY
AQNCWIEGAVDYFYGNGNCFLEHCTFYNMRDGAIIVAPSHKVGTRWGYVLNNCIVDGNEL
ADTESVKLGRPWHNSPIAVYLNTIFNIKIAPEGWTDMGAIPQMFAEYNSKDKEGNTVDLS
QRKTQYTYQDEQENPVTGICQAVLTAGEAARYTYENVVREGDNWDPKKYMEQISAPENLK
RENGILSWDASKYAICYLVIANDETVQITKETSCNVEEGKTYQVKAVSEYGSLSEPSKE