Protein Info for BACOVA_03437 in Bacteroides ovatus ATCC 8483

Annotation: response regulator receiver domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1339 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 763 to 785 (23 residues), see Phobius details PF07494: Reg_prop" amino acids 30 to 52 (23 residues), 19.4 bits, see alignment (E = 2.9e-07) amino acids 74 to 96 (23 residues), 15.3 bits, see alignment (E = 6.7e-06) amino acids 203 to 222 (20 residues), 16.1 bits, see alignment (E = 3.6e-06) amino acids 341 to 361 (21 residues), 18.6 bits, see alignment (E = 5.5e-07) amino acids 516 to 537 (22 residues), 18.7 bits, see alignment (E = 5.1e-07) amino acids 558 to 580 (23 residues), 15.8 bits, see alignment (E = 4.4e-06) PF07495: Y_Y_Y" amino acids 700 to 755 (56 residues), 32.3 bits, see alignment (E = 2.7e-11) PF00512: HisKA" amino acids 807 to 872 (66 residues), 43.3 bits, see alignment 1.1e-14 PF02518: HATPase_c" amino acids 924 to 1039 (116 residues), 81.5 bits, see alignment E=2.1e-26 PF00072: Response_reg" amino acids 1085 to 1195 (111 residues), 92 bits, see alignment E=9.8e-30 PF12833: HTH_18" amino acids 1255 to 1331 (77 residues), 73 bits, see alignment 7.2e-24

Best Hits

Predicted SEED Role

"DNA-binding response regulator, AraC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1339 amino acids)

>BACOVA_03437 response regulator receiver domain protein (Bacteroides ovatus ATCC 8483)
MKNVFTFLLLLFSLLCNGQSPKLFTTDKELSSSLINQIYQDRNGFIWIATEDGLNRYDGA
KFTIYKHEPNNEHSLAHNFVRTVFEDSKGHLFIGTYMGIQMYDPATDNFTPLAIREDNGE
IFESNIVSFIERRNGEIWVSGNMLCRLNIKDYLLTVQKIDIPMTSTGFMIEDKKQNVWIA
KDEEGVYRLDSNNQLTLYLSKDNGYVKSICEDSRGNIYVGSMRKGLFVYNKRQDSFIPID
FKEKRELPICFLYSGPQNELYIGTDGKGMSVYNNQTHEISEYNFDNNYFDSKNSKIHSIL
KDNSGNLWLAVYQKGVMQIPARTNSFKYIGHKSMDKNMIGSSCITSFCKDNNGMLWVGTD
NDGIYALTEKLEPAKHFSHTNHPNSVPSTVIKLYEDSEYNIWVGSFINGMGKLNKQTGLC
DYQYKLVDKNNNYIQRVYDFAEDKNKRLWIATMGFGLFYYDLKTKEFTSIQSRTSLINEW
IGCLHYSDDNKLYVGTYDGINCIDLDSPDFQSHKILSQNVIYSIFEDDEGVVWLGSSEGL
SGWNKNTKELTTYTTADGLPSNTIYAIQGDGKDFLWISTNAGISQFQKKNNKFINYYVSD
GLQGNEFYKNASFKDKQGIIWFGGMNGITYFNPQDIINPAKTWNIRITDFFLHNNPVRKG
MKSGIHNIINCPVFNAKEFYLSHKDNVFSIEFATLELNAPEHINYLYSINDEKWISLPKG
VNRISFSNLKPGTYNFKIRAKDNTVYSNIKEITIFISPAWYASWWAKVIYSLLLLTIIFI
IILQIRHRYRMHQEMLQHIHTEQINEAKLQFFINISHEIRTPMSLIISPLQKLIKNEENN
ERLKIYHIIYRNAERILNLVNQLMDIRKIDKGQMFLMFRETNIIPFIEDLCTTFGQQANT
KNIQLQLHSTLRELNVWVDTGNFDKIILNILSNAFKFTPEKGNIDITIRTGEDNTLPDPL
KQYAEIIIADTGTGIDEQEKEHIFERFYQIRNSQQNPKGGTGIGLHLTRSLVELHHGIIY
VENNKEQPGCRFIIRLPLGNKHLRPEEVDNNEQKVTVAVPTVPVISPIIENKEEKKVRVK
TKYRVLIVEDDEEIRNYIAKEFGDKFHIMESRNGKEALEQIFKKAPDLVISDIMMPEMDG
LTLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLIN
TRQQLRKVFTGQQNLENKVQKLEVKSPDEKLMERIMKVINENISNPNLTIETITTEVGIS
RVHLHRKLKELTNQTTRDFIRNIRLKEAARLLSEKQHTISEIAMLTGFTDPNNFSTTFKE
LYGMPPSMYMKEQLSKKEE