Protein Info for BACOVA_03382 in Bacteroides ovatus ATCC 8483

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1021 signal peptide" amino acids 1 to 41 (41 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 43 to 1021 (979 residues), 924.6 bits, see alignment E=9.6e-282 PF13620: CarboxypepD_reg" amino acids 44 to 114 (71 residues), 42 bits, see alignment 1.5e-14 PF13715: CarbopepD_reg_2" amino acids 45 to 125 (81 residues), 63.6 bits, see alignment E=2e-21 PF07715: Plug" amino acids 132 to 237 (106 residues), 67 bits, see alignment E=3.1e-22 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 213 to 243 (31 residues), 59.4 bits, see alignment (E = 2.2e-20)

Best Hits

KEGG orthology group: None (inferred from 91% identity to bth:BT_3569)

Predicted SEED Role

"TonB family protein / TonB-dependent receptor" in subsystem Iron acquisition in Vibrio or Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1021 amino acids)

>BACOVA_03382 TonB-linked outer membrane protein, SusC/RagA family (Bacteroides ovatus ATCC 8483)
MEKFNAMRTRLLQHLQKKAIRSKSIMTLVCLLLASASAFAQTKTVTGTVTDAANEPLIGA
SVLVQGTSTGTITDMDGKYSISVTPEDVLAFSYVGMTSQTIKVGTQNVINVTLKEDSQVL
AETVVIGYGSAKKRDLTGSITNIKGEELANKPAMNPLSSLQGKVAGVQIVNSGRAGSDPE
IRIRGTNSINGYKPLYIVDGLFNDNINFLNPEDIESMEILKDPSSLAIFGVRGANGVIII
TTKKAKEGQTLVNINTSFGFKKVVDKVKLVNSSQFKELYNEQLANQKDDPFDYAGWDANT
DWQDEIFQTAFITNNNISITGASPKHSFYLGVGYSYEQGNIEHEKFSKITINASNDYKIT
DFLKVGFQFNGARMLPADSKQVLNALRATPIAPVYNNEYGLYTALPEFQKAQINNPMVDV
ELKANTTKAENYRASGNIYGEVDFLKHFTFKAMFSMDYASNNGRTYTPIVKVYDAAVNGG
ISTLGTGKTEVSQFKENETKVQSDYLLTYTNSFDNGNHNLTATAGFTTYYNSLSRLDGAR
KQGVGLVIPDNPDKWFVSIGDAATATNGSTQWERSTLSVLARVIYNYKGKYLFNGSFRRD
GSSAFSYTGNEWQNFFSLGGGWLMSEEEFMKDIKWLDMLKIKASYGTLGNQNLDKAYPAE
PLLTNAYSAVFGKPSIIYPGYQLAYLPNPNLRWEKVEAWEAGFETNLLRNRLHFEGVYYK
KNTKDLLAEVPGISGTIPGIGNLGEIQNKGVEMAVTWRDQIGDWGYSVSANLTTIKNEVK
SLVQEGYSIIAGDKQQSYTMAGYPIGYFYGYKVAGVYQSQADIDASPKNTLATVTPGDLK
FADVNGDGEITPEDRTMIGNPTPKVTYGFSLGVDYKNWSLGIDMMGQGGNKIFRTWDNYN
FAQFNYLEQRLDRWHGEGTSNTQPLLNTKHSINNLNSDYYIENGSFFRIRNVQLAYTFDK
SLIAKIRLQALKVYVNIQNLKTWKHNTGYTPELGGTATAFGVDNGSYPVPAVYTFGINLT
F