Protein Info for BACOVA_03253 in Bacteroides ovatus ATCC 8483

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1015 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 50 to 1015 (966 residues), 987.9 bits, see alignment E=7.2e-301 PF13620: CarboxypepD_reg" amino acids 51 to 108 (58 residues), 34.8 bits, see alignment 3.5e-12 PF13715: CarbopepD_reg_2" amino acids 51 to 130 (80 residues), 61.3 bits, see alignment E=1.4e-20 PF07715: Plug" amino acids 138 to 242 (105 residues), 72.6 bits, see alignment E=7.3e-24 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 218 to 248 (31 residues), 64.7 bits, see alignment (E = 4.8e-22) PF00593: TonB_dep_Rec" amino acids 420 to 977 (558 residues), 78.9 bits, see alignment E=1.5e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1015 amino acids)

>BACOVA_03253 TonB-linked outer membrane protein, SusC/RagA family (Bacteroides ovatus ATCC 8483)
MKQSNLLNAQFARRLFRTAFSSWQLLAVMLIVCMNVAVGSKLYAQSNTIAVKGKVMADGE
PVIGATVLVKGVSTGTATDMDGNFSLNVASKAVLVVSSIGYETQEVPVNGRQFINVVLKS
DVVALKDVVVVGYGVQKKVNLTGAVSSVSTDELEGKPISNVLEAMQGTTPGLVIQQGSST
PGSVPSINIRGLNTMNNNDPLVIIDGIEGSLANLNPADIEQISILKDASSTAIYGSRASN
GVVLVTTKKGKAGKVEISYDFMYGVQQPTSLPKIADSWVYAELYNEAAVNSGRAAKFTPE
QIAQYRNGGPNVNWVKELYNRNSPQSSHNVSMTGGNDQLSYMASLGYLDQSSMFKGPDYG
YKRYNARLNVSHKVTNNFTLNLTSQFARNDIKEHAYWTEWIIEQANRMPPIYPIKNEDGS
YNYPAGSNSNGLQRLEEGGYRQNVNDELLGTIQAEWEVYKGLKLIGSAGGRVWNNKLHEN
RKAFEGTGDTENKLTEQFYRSKNITTNLMVTYNTKIGKHSIGGLLGYAYEGFSEKQFSTS
RLTEDSKYDIFVGDLSGDKVSNTGSGSDWAIYSGFARATYNYDEKYLLEFNIRNDYSSYF
AKGNRSGVFPSFSAGWRISEEKFWSVLKPYVPSLKIRGSWGLVGNNRIGAYQYMQTVSVT
NGISFGDKLAQTATFASTNPDLKWETTRMANIGFELGLLNNDLNITFDCFNNRTKDILVN
LPVPGLFGNGAPIQNAGKVETRGWELSVSYRLKTGPVVHNFAGNISDSFNEVIDTRGTEI
IGGSDVQTIIKEGYPLYSYYAYRSDGFFQNEEECQKGPHLEGITPKPGDIRYLDKNGDGV
IKPDDDRFIVGNDFPRYTFGFTYGLEYKGFDFSMMWQGVGKRNKWMRGESVEAFHNNNEG
PVMDFHQDRWTPNNPDATYPRLTMGAESANNAAKSDFWIQDAKYLRLKNAQIGYTFPQQW
MKKLYVKNLRIFASVQNPLTFTKMKGGWDPEYTGDGSGRSYPVARVYSFGLNVKF