Protein Info for BACOVA_03251 in Bacteroides ovatus ATCC 8483

Annotation: UbiC transcription regulator-associated domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 290 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details PF00392: GntR" amino acids 62 to 122 (61 residues), 54.6 bits, see alignment E=6.9e-19 PF07702: UTRA" amino acids 170 to 282 (113 residues), 91.3 bits, see alignment E=5.3e-30

Best Hits

KEGG orthology group: K03710, GntR family transcriptional regulator (inferred from 61% identity to bth:BT_2103)

Predicted SEED Role

"Predicted transcriptional regulator of N-Acetylglucosamine utilization, GntR family" in subsystem Chitin and N-acetylglucosamine utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (290 amino acids)

>BACOVA_03251 UbiC transcription regulator-associated domain protein (Bacteroides ovatus ATCC 8483)
MFIAFLNFICSYILSIVQIYRFYFYSKQNLDYFLINLIFAENKPIRIDMKLDHNSDKPLH
IQAEEILRRLIESEEYKNGKLFPNEVELSEQLHISRNTLRQAINKLVFEGLLVRKKGYGT
KVVKKGIVGGVKNWLSFSQEMKMLGIEIRNFELHISLKRPTEEIGTFFDLGSNPDTRCVV
MERVRGKKEYPFVYFISYFNPNIPLTGEEDYTRPLYEMLETQYNIVVKTSKEEISARLAG
EFIAEKLEIKSNDPILIRRRFVYDVNGVPIEYNVGYYRADSFTYTIEAER