Protein Info for BACOVA_03117 in Bacteroides ovatus ATCC 8483

Annotation: DNA polymerase III, alpha subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1268 PF02811: PHP" amino acids 6 to 222 (217 residues), 170 bits, see alignment E=1.4e-53 TIGR00594: DNA polymerase III, alpha subunit" amino acids 100 to 1139 (1040 residues), 1084.2 bits, see alignment E=0 PF07733: DNA_pol3_alpha" amino acids 400 to 668 (269 residues), 297.7 bits, see alignment E=2.2e-92 PF17657: DNA_pol3_finger" amino acids 671 to 834 (164 residues), 191 bits, see alignment E=2.4e-60 PF14579: HHH_6" amino acids 907 to 996 (90 residues), 98.3 bits, see alignment 6.1e-32 PF01336: tRNA_anti-codon" amino acids 1103 to 1182 (80 residues), 32.2 bits, see alignment 2.1e-11

Best Hits

KEGG orthology group: K02337, DNA polymerase III subunit alpha [EC: 2.7.7.7] (inferred from 95% identity to bth:BT_2230)

Predicted SEED Role

"DNA polymerase III alpha subunit (EC 2.7.7.7)" in subsystem DNA-replication (EC 2.7.7.7)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.7.7

Use Curated BLAST to search for 2.7.7.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1268 amino acids)

>BACOVA_03117 DNA polymerase III, alpha subunit (Bacteroides ovatus ATCC 8483)
MQDFVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNS
GPKGEVKDLKKRIAGIEAGTIECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVARRTM
DLKEGKPDQSGYHLIVLAKNETGYHNLIKLVSHAWTRGYYMRPRTDRSELEKYHEGLIIC
SACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLELQRHKATVPRANHECYPLQVNV
NKHLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEWMKT
REEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTEKDL
FDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEPLTE
EVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLGITK
IDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGTMAT
KMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEASSDPLLRDT
IKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIEDTG
LIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDISDPATYKLYSDGRTIGTFQFESA
GMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPIMEKYLKDTY
GITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDPKVL
EKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDITKLM
DECKAMGIQTLGPDVNESNLKFTVNHDGDIRFGLGAVKGVGEAAVQSIMEERRKNGPFLG
IFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGNRYQ
ADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLDRLNRERDLVGIYLSAHPLDEFSIVL
EHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIPFWG
NDWVTYQGYLNEGTFLYIKARCQAKQWRQDELEVKITSMELLPDVKEELVQKITIVIPLS
VLNSALVTELATLTKEHPGNTELYFKVTDDADVTHMSVDLISRPVRLSVGRDLITYLKER
PELGFHIN