Protein Info for BACOVA_03054 in Bacteroides ovatus ATCC 8483

Annotation: multidrug resistance protein, SMR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 106 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 31 to 50 (20 residues), see Phobius details amino acids 62 to 81 (20 residues), see Phobius details amino acids 87 to 105 (19 residues), see Phobius details PF00893: Multi_Drug_Res" amino acids 1 to 95 (95 residues), 77.7 bits, see alignment E=4e-26

Best Hits

KEGG orthology group: K11741, quaternary ammonium compound-resistance protein SugE (inferred from 76% identity to bsa:Bacsa_3272)

Predicted SEED Role

"Quaternary ammonium compound-resistance protein SugE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (106 amino acids)

>BACOVA_03054 multidrug resistance protein, SMR family (Bacteroides ovatus ATCC 8483)
MNWIILIIAGLFEVGFTFCLGKIKGATGTDFYLWGAGFVISVILSMFLLAKAAQTLPIGT
AYPVWTGIGAVGTVLIGILFFHEPATLGRLFFMTTLIISIVGLKLI