Protein Info for BACOVA_02986 in Bacteroides ovatus ATCC 8483

Annotation: site-specific recombinase, phage integrase family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 405 PF17293: Arm-DNA-bind_5" amino acids 28 to 100 (73 residues), 28.7 bits, see alignment E=2.4e-10 PF13102: Phage_int_SAM_5" amino acids 118 to 211 (94 residues), 55.9 bits, see alignment E=6.9e-19 PF00589: Phage_integrase" amino acids 228 to 388 (161 residues), 79.7 bits, see alignment E=3.4e-26

Best Hits

KEGG orthology group: None (inferred from 69% identity to pdn:HMPREF9137_0364)

Predicted SEED Role

"Integrase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (405 amino acids)

>BACOVA_02986 site-specific recombinase, phage integrase family (Bacteroides ovatus ATCC 8483)
MAAKKVVRSDNTYMISTDDTDNPKLGAKILSDGRESLFLDYYLGYIMVYDESKDKTVAKK
DRKREALKLYLWQAPRTPLERQQNKETLELAKKIRFERSQELLENITGYRLRKERKVNFL
DYFQAYNDRYTKKDVRMMKGVLTRFIDFLKIEYPQYSTYIKPEQITKDMVSLFVEYLQSR
SKGEGALDYYSKFKKVINYAVDNDVIAKNPCKGVVCKCDKQVLRKDVLSLEEMQALISTH
YDNENPEIRRAFIFCLYTGIRFCDVQDLKYSNVDYSNKILSFEQNKTKGHSANSGVVIPL
NDDLLQLIGEPHTEQYEQETIFRLPSATMCLKALRRWTKRAGITKHITWHCARHSFAVNI
LNNGANIKTVASLLGHSGLKHTEKYTRAVDSLKEAAINSLPKLKL