Protein Info for BACOVA_02742 in Bacteroides ovatus ATCC 8483

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1062 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 43 to 1062 (1020 residues), 649.3 bits, see alignment E=1.5e-198 PF13715: CarbopepD_reg_2" amino acids 44 to 122 (79 residues), 67.9 bits, see alignment 1.2e-22 PF13620: CarboxypepD_reg" amino acids 44 to 100 (57 residues), 35.1 bits, see alignment 2.8e-12 PF07715: Plug" amino acids 138 to 254 (117 residues), 57.7 bits, see alignment E=3.2e-19 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 230 to 260 (31 residues), 54.3 bits, see alignment (E = 8.6e-19) PF00593: TonB_dep_Rec" amino acids 440 to 790 (351 residues), 51.4 bits, see alignment E=3.3e-17

Best Hits

KEGG orthology group: None (inferred from 79% identity to bsa:Bacsa_1913)

Predicted SEED Role

"FIG01289191: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1062 amino acids)

>BACOVA_02742 TonB-linked outer membrane protein, SusC/RagA family (Bacteroides ovatus ATCC 8483)
MNMEKCKYLLFCGTLALWMAGSFQQVYAATEPSSQAIQQQSNKVTGKVSDATGPIIGASV
VEKGTANGTITDLDGNFSLNVKAGATLVVSYVGYKSEEVKAGRGPLNITLKEDAKALDEV
VVTALGIKRERKALGYGIDEVKGEALTKAKETNLINSMAGRVPGLVVSQTAGGPSGSTRV
ILRGSTEMTGNNQPLYVVDGVPLDNTNFGSAGTNGGFDLGDGISSINADDVENMSVLKGP
AASALYGSRASHGVILITTKRANKDKISVEYNGTLTFDTQLAKWDEVQQIYGMGSNGTYS
YDAISNTNKSWGPKADGSNMLKYFDGVERPFLIVPDNTSNFFRTGITATNSAIIGVNSGK
TGIRFTYTDMRNKDIVPQTHMSRDIFNLRANTSAGKVDLDFSVNYTREDVKNRPALGDSK
SNIGKNLMTLATTYDQEWLQTYQTADGEYSNWNGMDPYNVNPYWDIYKNFNKSKKDLFRM
NGKAVWNIDPHLKLQATLGAELNWFTFDDYKAPTTPGFEAGRLQNSAFRNRMYNFEALAL
YNNHWGDFDFNATLGGNVYKVNNQTTVTTAQDMKIRDVPSLTSFNEISVVPGSYRKQINS
VYGAVNVGWKHMLYLDATLRGDQSSTLPTGNNMYVYPSFSGSFVFSELTKLGDLLPYGKV
RMSWAQVGSDTDPYQLGLVYTKSKYAYPGYTIGYIDNGTIPNKDLKPTKTNSVEMGLELK
FLKNRIGLDFTYYSQISKNQIMGMASSWTTGYNYRLINAGKIENKGIEIALSTRPIQTRD
FSWDINLNFSKNSNKVKELDGESDMFELEKASWLDVQVAAKVGENFGSIVGPDFQRNEKG
DILIDPQTGLPQYDKSNHVLGNASWDWTGGLLTNFTYKNLSLVAVFDVKVGADLYSMSAR
AAYESGKSPETLAGRDAWYRSEEERLAAGIAKGADNWKPTGGFVAPGVIDNGDGTYRPND
IYINPEDYWMSVCRNAPSMFIYDNSYVKCRELTLSYNVPKSWLKNVVSGLTVSFVARNPF
IVWKNIPNIDPDSNYNNTTGMGLEYGSLPSRRSYGFNVNVKF