Protein Info for BACOVA_02636 in Bacteroides ovatus ATCC 8483

Annotation: Alpha-L-rhamnosidase N-terminal domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 915 signal peptide" amino acids 1 to 51 (51 residues), see Phobius details PF08531: Bac_rhamnosid_N" amino acids 194 to 365 (172 residues), 187.2 bits, see alignment E=4.4e-59 PF05592: Bac_rhamnosid" amino acids 374 to 484 (111 residues), 77.6 bits, see alignment E=1.2e-25 PF17389: Bac_rhamnosid6H" amino acids 490 to 815 (326 residues), 364.1 bits, see alignment E=1.6e-112 PF17390: Bac_rhamnosid_C" amino acids 819 to 882 (64 residues), 43.6 bits, see alignment 4.4e-15

Best Hits

KEGG orthology group: K05989, alpha-L-rhamnosidase [EC: 3.2.1.40] (inferred from 56% identity to hhy:Halhy_0156)

Predicted SEED Role

"Alfa-L-rhamnosidase (EC 3.2.1.40)" in subsystem L-rhamnose utilization (EC 3.2.1.40)

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.40

Use Curated BLAST to search for 3.2.1.40

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (915 amino acids)

>BACOVA_02636 Alpha-L-rhamnosidase N-terminal domain protein (Bacteroides ovatus ATCC 8483)
MKKDYMKYQQNSKREEKSKFITNQLTNMAHIPIRSYLYLLLGTTLFSCVPQELKPPFELK
CENIPVPVGVDTQTPRLSWKLPLLEEDSINRVEIWLSTDSTQLSGRQSGYWNKSIIGAPI
RVSYDGQPLDSYTTYYWKIGYQTSSKQKTTFSPISSFTTGCLSPDNWKGKWITDKHDITY
RPAPYYRKSFQLDKTIEQALLTIASAGLHELSINGQRAGNHFLDPMYTHFDKRILSVTHD
VTSLLSLGENVIGVQLGNGWYNHQSTAVWFFDKASWRNRPKFTAQLHLRYTDGTTEYLGT
DSTWQTTDSPVIFNSIYTAEHYDAQKELAGWDSPGFNATGWYHAQETESPTETIKSQVMY
PIRETARYTATQCKKINDSCYVYHFPQNIAGVTELKVKGKKGTKLRLKHGELLDKNGMVN
MANIDYHYRPTDDSDPFQTDIVILSGKQDRFMPKFNYKGFQFVEVSSSTPIQLSDENLIA
VEMHSDVPAIGYWSSSSELLNKIWKATNSSYLANLFGYPTDCPQREKNGWTGDAHIAIET
GLYNFDGISIYEKWMNDFCDEQKDNGVLPCIIPTSVWGYDWANGVDWTSAVAIIPWEIYR
FYGDTTLLRRMYGPIKKYVSYIESISTNHLTDWGLGDWVPVRSKSNITLTSSIYYYTDVC
ILAKAARLFGYAEDASYYNTLAQKIKEAINTSFLNKETGIYAGGTQTELAMPLYWGIVPE
EDKKKVAARLHELVEKDDYHLDVGLLGSKALLSALSDNGYAETAYKVASQDTYPSWGYWI
KQGATTLHENWRTDVVIDNSYNHIMFGEIGAWLYKGLGGIQIDEKHPGFKHILLKPFFPA
DMNELTIRYNTPYGWLNINWVRQTNDCIRYTIDIPAGTSATFVPFTMPEPQKSITLQAGK
HSLELDFIHQLINQR