Protein Info for BACOVA_02635 in Bacteroides ovatus ATCC 8483

Annotation: transporter, major facilitator family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 464 transmembrane" amino acids 26 to 52 (27 residues), see Phobius details amino acids 80 to 99 (20 residues), see Phobius details amino acids 109 to 134 (26 residues), see Phobius details amino acids 147 to 167 (21 residues), see Phobius details amino acids 184 to 208 (25 residues), see Phobius details amino acids 236 to 253 (18 residues), see Phobius details amino acids 275 to 301 (27 residues), see Phobius details amino acids 313 to 331 (19 residues), see Phobius details amino acids 337 to 358 (22 residues), see Phobius details amino acids 390 to 408 (19 residues), see Phobius details amino acids 419 to 441 (23 residues), see Phobius details TIGR00792: sugar (Glycoside-Pentoside-Hexuronide) transporter" amino acids 9 to 461 (453 residues), 394.7 bits, see alignment E=2.3e-122 PF13347: MFS_2" amino acids 11 to 448 (438 residues), 340.2 bits, see alignment E=1.4e-105 PF07690: MFS_1" amino acids 18 to 365 (348 residues), 57.1 bits, see alignment E=1.5e-19

Best Hits

KEGG orthology group: K03292, glycoside/pentoside/hexuronide:cation symporter, GPH family (inferred from 60% identity to psn:Pedsa_2974)

Predicted SEED Role

"Putative permease of the Na+:galactoside symporter family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (464 amino acids)

>BACOVA_02635 transporter, major facilitator family protein (Bacteroides ovatus ATCC 8483)
MENIKLREKIGYGLGDAASSMFWKLFTMYLLFFYTDVVGISSAVVGTMFLITRIWDTFLD
PFVGILGDRTNSRWGKFRPYLLWIAIPFGICGILTFSSFGDNMTTKIIFAYATYTLMMMV
YSLINVPYASLLGVMSANPQVRTEFSSYRMTFAFGGSILVLFLIEPLVDIFSKMKITENI
PDIAFGWQMAAVVFAIMASGMFLLTFLWTKERVQPIKEEKGSLKEDLKDLGRNKPWWILL
CAGIMALVFNSLRDGSAVFYFKYYVDSSDTFSFSFMNSAITLITIYLVLGQAANILGIMF
VPSLTKRIGKKKTYFVAMVGATILSVLFYFLPKDFIWGILCLQVLISICAGIISPLLWSM
YADISDYSEWKTGRRATGLIFSSSSMSQKFGWTIGGALTGWLLAYFGFKANVIQSDFAQT
GICMMMSIFPAIATMLSAFFISRYPLNEKRLYEISTELEERRKK