Protein Info for BACOVA_02587 in Bacteroides ovatus ATCC 8483

Annotation: efflux ABC transporter, permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 773 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 269 to 293 (25 residues), see Phobius details amino acids 314 to 342 (29 residues), see Phobius details amino acids 362 to 384 (23 residues), see Phobius details amino acids 404 to 428 (25 residues), see Phobius details amino acids 650 to 672 (23 residues), see Phobius details amino acids 693 to 717 (25 residues), see Phobius details amino acids 736 to 756 (21 residues), see Phobius details PF12704: MacB_PCD" amino acids 20 to 231 (212 residues), 50.6 bits, see alignment E=3.1e-17 amino acids 508 to 607 (100 residues), 29.6 bits, see alignment E=8e-11 PF02687: FtsX" amino acids 274 to 388 (115 residues), 44.2 bits, see alignment E=1.9e-15 amino acids 653 to 766 (114 residues), 56.9 bits, see alignment E=2.2e-19

Best Hits

KEGG orthology group: None (inferred from 68% identity to bth:BT_0862)

Predicted SEED Role

"putative ABC transporter permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (773 amino acids)

>BACOVA_02587 efflux ABC transporter, permease protein (Bacteroides ovatus ATCC 8483)
MIKHYLKVAFRNLIKYKTQSLVSIIGLAVGFTCFALSVLWIRYEMTYDNFHEGADRIYLA
GSSFRLYGDGFTYNSSSFLADYLAKNCPEIEKVCRIFYDWNEKKIKNEDVEFVVRRIEVD
SNFISMFNIKVLDGDNHLQLKKDEIAITENTAKRIFGKESPIGKHLILEESNEEKIIVAV
VKSWEGHSLFSFDILLPFHDTNPNWGNQRCQTLFRIYPNCDIEALKQRLSEYEVQQDGHK
YPNSTLIAPLSTLRSSHPREDVNVKLNHIRLFACISGLVIICGICNYLTMLITRIRMRKR
ELALRKVNGSSNGGLLTLLLTELVLLLILSSGIGLVLIELILPTFKRLSQIYEGASFFYI
EVFVYILSLIAVTVGFASLLIRYISKRTLLSNINKKSNLHLSGWFYKSSILFQLFIGIAF
VFCTLVMMKQLNFLLNTKELGIERHNVGAVVYCSENVPFKEILEQMPDVTKYLSGFQTPI
PKMYFSTFRIKEWEGKTTDSEQYIDLEDETINQEYADFFGVEVLEGSMLDEKDGKNMVVI
NEAAVKAFGWTQPVGKKIDKLGRHYIVKGVIKNISYNAPIHPVAPAMFFLPDNTGRGGII
FKVKEGTWNVVSEKIKAEVNKVNPNAELMLSNMEEVYDTYMKSERTLCQLLSIVSFICIA
IAVFGIFSLVTLSCQQRRKEIAIRKVNGANIGIILNLFFREYLLLLVFSSFFAFPLGYVM
MKHWLENYIKQTPIEWWLYAVIFIGMGFVIFLSIIWRVWKAAQQNPAEVLKGE