Protein Info for BACOVA_02559 in Bacteroides ovatus ATCC 8483

Annotation: transcriptional regulator, LacI family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 355 PF00356: LacI" amino acids 7 to 52 (46 residues), 59.2 bits, see alignment 4.2e-20 PF00532: Peripla_BP_1" amino acids 67 to 266 (200 residues), 26 bits, see alignment E=9.6e-10 PF13407: Peripla_BP_4" amino acids 69 to 329 (261 residues), 118 bits, see alignment E=8.2e-38

Best Hits

KEGG orthology group: None (inferred from 89% identity to bth:BT_0824)

Predicted SEED Role

"hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (355 amino acids)

>BACOVA_02559 transcriptional regulator, LacI family (Bacteroides ovatus ATCC 8483)
MEDQNYTIKDIARMAGVSAGTVDRVLHNRGDVSPKSKAKVQKVLDEIHYQPNVFAIGLAA
KKKYSFLCLIPYYIEHDYWHSVVGGIERVRQELRPFNVSIDYLCYHHGDEKSYQEACLSI
KEKNVDAVLISPNFREETLALTAYLQENKIAYAFVDFNMEEAKALTYIGQDSYKSGYIAA
KILMRNYSAGEGQELVLFLSNNKDNPAEIQMQRRLDGFMSYIAEEYNNLVIHEVVLNKSD
QESNQQTLDEFFQAHPKALLGVVFNSRVYQLGEYLRHAGRSMKGLIGYDLLKANVDLLKS
GDVHYLIGQRPGLQGYCGVKALCDHVVFKKSVEPVKYMPIDILIKENIDFYFEFV