Protein Info for BACOVA_02380 in Bacteroides ovatus ATCC 8483

Annotation: putative thioredoxin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 120 PF13098: Thioredoxin_2" amino acids 28 to 111 (84 residues), 31.2 bits, see alignment E=4.8e-11 PF00085: Thioredoxin" amino acids 29 to 114 (86 residues), 77.7 bits, see alignment E=1.2e-25 PF13728: TraF" amino acids 34 to 94 (61 residues), 24.8 bits, see alignment E=3.5e-09

Best Hits

Swiss-Prot: 40% identical to THIO_BORBU: Thioredoxin (trxA) from Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680)

KEGG orthology group: None (inferred from 88% identity to bth:BT_0677)

Predicted SEED Role

"Thioredoxin" in subsystem Glycine reductase, sarcosine reductase and betaine reductase

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (120 amino acids)

>BACOVA_02380 putative thioredoxin (Bacteroides ovatus ATCC 8483)
MKIIDLTKDSFVEKVADYQSYPDNWNFKGNKPCLVDFHAPWCVYCKALSPILDQLAKEYE
GKLDIYKVDVDQEPELESAFKIRTIPNLLLCPLNGKPTMKLGTMNKNQLKELIETSLLSE