Protein Info for BACOVA_02175 in Bacteroides ovatus ATCC 8483

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1093 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 32 to 1093 (1062 residues), 721.8 bits, see alignment E=1.8e-220 PF13620: CarboxypepD_reg" amino acids 33 to 91 (59 residues), 39.9 bits, see alignment 8.9e-14 PF13715: CarbopepD_reg_2" amino acids 33 to 114 (82 residues), 70 bits, see alignment 2.8e-23 PF07715: Plug" amino acids 122 to 233 (112 residues), 63.8 bits, see alignment E=4e-21 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 209 to 239 (31 residues), 57 bits, see alignment (E = 1.2e-19) PF00593: TonB_dep_Rec_b-barrel" amino acids 473 to 961 (489 residues), 63.5 bits, see alignment E=7.3e-21

Best Hits

KEGG orthology group: None (inferred from 54% identity to fjo:Fjoh_4491)

Predicted SEED Role

"SusC, outer membrane protein involved in starch binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1093 amino acids)

>BACOVA_02175 TonB-linked outer membrane protein, SusC/RagA family (Bacteroides ovatus ATCC 8483)
MKNKKEGFTFRVGLFLLLVTFCLGTVQAQSSKITGYVKDQSGEPLIGVNVMEKGTTNGTV
TDLNGFYSIVVKASNAVLNFSYIGYKNQEISVAGKKLIDVTMKDDSETLDEVVVVGYGTM
RKKDLTGSVVQVRPDKIANENPKTVQDILRGTPGLVVGYGEGDAGAKGGGEMKIRGQRSV
YTDGGHNNPLIILDGMFFQGELSEINPDDIGQIDVLKDASAAAVYGAQAANGVIIITTKK
GKKGKPVVNFTASVGLTQKAAYRDRWQTTDEYLQHYVDWKEKNTYGVNAETGEYAAYSRP
GNEYTSKPEYFRNPNNLSDAVSLEQWRNYSTNREGESDLSIWARRLGFRYDTALLDNLLS
GKTVDWQDEAFRLGFNQDYNVSISGAGDKVDYYMSLGYLRNEGAFVDDTYRAIRANLKLN
AKVTNWFEVGANINFQDRSDGEIGMDKGGFMENSPYAMLKDENGNYTQDPLMYQYDRANE
TNWYFEKQYIQLEKGYTTLNTIFNAKVKLPFNITYQFNIAPRFQFFYDRYFTSAERPNSN
PNDRGTNREQAKRFNWSLNNTITWDQTFANKHHVILTFVQEAEERQYWSDRIEARNILPS
DALGFHNTQNGDKSVSTFRTDDNHQTADALMARAFYSYDDRYMVTGTIRRDGYSAFGANN
PYAWFPSGGIAWSFTNEDFFQKYAHIMNSGKLRVSYGKNGNRSLENPYEALANLYPGGGK
MQGYITSSGDLYLMRYLMAQRMKNPNLQWEKTQSWNFALDFGFLNDRITGTLEYYRMSTK
DMIMRQPLSNFTGFENITTNLGQVDNSGFEVALNTLNIDKKNFQWSSSFSLSYNKNRIKH
LFGDRQDIVDATGSVVGSREADYVAAGWFIDKPISAIWDYKVTGIWQKDEVEEAKKYGQV
PGDPKVWNNPANDQYDADGNLVKVVYNNDDKVFQGQTAAPVTWALRNDFTLWKDLTLSVN
IYSRMGHKSLESMYLNNDDDGGGMTYRLVNKNAKEYWTVDNPTNKYARIEAQGPEGAKGA
RRLYNRSFIRLENISVGYTLPRAWTEKIQIDRVKVYGSVRNAAVWAKDWEGYGDPETGNF
ASRIWTLGLNLTF