Protein Info for BACOVA_02089 in Bacteroides ovatus ATCC 8483

Annotation: transporter, major facilitator family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 457 transmembrane" amino acids 24 to 49 (26 residues), see Phobius details amino acids 77 to 95 (19 residues), see Phobius details amino acids 107 to 131 (25 residues), see Phobius details amino acids 145 to 166 (22 residues), see Phobius details amino acids 181 to 201 (21 residues), see Phobius details amino acids 228 to 245 (18 residues), see Phobius details amino acids 267 to 294 (28 residues), see Phobius details amino acids 306 to 323 (18 residues), see Phobius details amino acids 329 to 351 (23 residues), see Phobius details amino acids 382 to 401 (20 residues), see Phobius details amino acids 415 to 436 (22 residues), see Phobius details TIGR00792: sugar (Glycoside-Pentoside-Hexuronide) transporter" amino acids 7 to 453 (447 residues), 419.4 bits, see alignment E=7.3e-130 PF13347: MFS_2" amino acids 9 to 439 (431 residues), 362.1 bits, see alignment E=3.4e-112 PF07690: MFS_1" amino acids 15 to 366 (352 residues), 69.3 bits, see alignment E=2.9e-23

Best Hits

KEGG orthology group: None (inferred from 79% identity to bfs:BF0773)

Predicted SEED Role

"Putative permease of the Na+:galactoside symporter family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (457 amino acids)

>BACOVA_02089 transporter, major facilitator family protein (Bacteroides ovatus ATCC 8483)
MIKLKEKIGYGLGDMASSMFWKLFGSYLMIFYTDVFGMSAAVVGTMFLVTRVWDSAFDPI
VGIIADRTHSRWGKFRPYLLFLAFPFAFIGILTFTTPEWSMTAKIVYAYITYSLMMMVYS
AINVPYASLLGVMSAEPHDRNVLSVYRMVFAYLGSFIALLLFMPMVNAFSEGHGEQYGWE
MAVTVIAVMCTVFFIGCFALTRERVKPIREKQAPLKDDLKDLLHNRPWWILLGAGIAALI
FNSIRDGATVYYFKYFIVENSNEPVTFLGIPFVLSGLYLAIGQAANIIGVVLAAPVSNRI
GKKRTYMWAMVVATVLSIVFYWFDKENLVLIFIFQILISICAGSIFPLLWSMYADCVDYS
ELKTGNRATGLIFSSSSMSQKFGWAIGSAVTGWLLGYFGFQANVVQNDQAINGIRMFLSF
LPAIGTLLSILFISMYPLSERRMKEIIGELEQKRNQH