Protein Info for BACOVA_01944 in Bacteroides ovatus ATCC 8483

Annotation: LICD family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 270 PF04991: LicD" amino acids 24 to 240 (217 residues), 160.1 bits, see alignment E=4.9e-51

Best Hits

KEGG orthology group: K07271, lipopolysaccharide cholinephosphotransferase [EC: 2.7.8.-] (inferred from 66% identity to pru:PRU_2909)

Predicted SEED Role

"Lipopolysaccharide cholinephosphotransferase LicD1 (EC 2.7.8.-)" in subsystem Phosphorylcholine incorporation in LPS (EC 2.7.8.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.8.-

Use Curated BLAST to search for 2.7.8.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (270 amino acids)

>BACOVA_01944 LICD family protein (Bacteroides ovatus ATCC 8483)
MANYDIRPLQLRILKNLLAVDKVCKEHNLRYYIMAGTMLGAVRHKGFIPWDDDLDIGMPR
ADYDLLMANAKEWLPEPYEAVCAENDKEYPLPFAKVQDANTTLIERMHLKYLGGVYIDIF
PLDGVPESRMAQRMHFAKYEFYKRVLYLIHRDPYKHGKGPSSWIPLLCRKFFTLTGAQES
IRKVMKKYDFDQCALVCDYDDGMKGIMSKDILGTPTPIRFEDEEVWGVQKYDAYLSQKYG
DYMTIPKQSGQRQHNFHYLDLNKPYRNFEV