Protein Info for BACOVA_01773 in Bacteroides ovatus ATCC 8483

Annotation: Holliday junction resolvase-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 138 PF03652: RuvX" amino acids 3 to 134 (132 residues), 131.9 bits, see alignment E=9.6e-43 TIGR00250: putative transcription antitermination factor YqgF" amino acids 6 to 134 (129 residues), 87.3 bits, see alignment E=4.5e-29

Best Hits

Swiss-Prot: 96% identical to YQGF_BACTN: Putative pre-16S rRNA nuclease (BT_0419) from Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)

KEGG orthology group: K07447, putative holliday junction resolvase [EC: 3.1.-.-] (inferred from 96% identity to bth:BT_0419)

Predicted SEED Role

"Putative Holliday junction resolvase YqgF"

Isozymes

Compare fitness of predicted isozymes for: 3.1.-.-

Use Curated BLAST to search for 3.1.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (138 amino acids)

>BACOVA_01773 Holliday junction resolvase-like protein (Bacteroides ovatus ATCC 8483)
MSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNFIGEYIAKEPVERIIIGLPKQ
MNNELSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQNKALV
DEISATIILQTYLESKRF