Protein Info for BACOVA_01708 in Bacteroides ovatus ATCC 8483

Annotation: Alpha-L-arabinofuranosidase domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 514 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF06964: Alpha-L-AF_C" amino acids 316 to 507 (192 residues), 174.7 bits, see alignment E=9.6e-56

Best Hits

Swiss-Prot: 100% identical to IABF_BACOV: Intracellular exo-alpha-L-arabinofuranosidase (asdII) from Bacteroides ovatus

KEGG orthology group: K01209, alpha-N-arabinofuranosidase [EC: 3.2.1.55] (inferred from 95% identity to bth:BT_0348)

Predicted SEED Role

"Alpha-N-arabinofuranosidase (EC 3.2.1.55)" in subsystem L-Arabinose utilization (EC 3.2.1.55)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.55

Use Curated BLAST to search for 3.2.1.55

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (514 amino acids)

>BACOVA_01708 Alpha-L-arabinofuranosidase domain protein (Bacteroides ovatus ATCC 8483)
MKAKLLVSTAFLAASVSLSAQKSATITVHADQGKEIIPKEIYGQFAEHLGSCIYGGLWVG
ENSDIPNIKGYRTDVFNALKDLSVPVLRWPGGCFADEYHWMDGIGPKENRPKMVNNNWGG
TIEDNSFGTHEFLNLCEMLGCEPYVSGNVGSGTVEELAKWVEYMTSDGDSPMANLRRKNG
RDKAWKLKYLGVGNESWGCGGSMRPEYYADLYRRYSTYCRNYDGNRLFKIASGASDYDYK
WTDVLMNRVGHRMDGLSLHYYTVTGWSGSKGSATQFNKDDYYWTMGKCLEVEDVLKKHCT
IMDKYDKDKKIALLLDEWGTWWDEEPGTIKGHLYQQNTLRDAFVASLSLDVFHKYTDRLK
MANIAQIVNVLQSMILTKDKEMVLTPTYYVFKMYKVHQDATYLPIDLTCEKMSVRDNRTV
PMVSATASKNKDGVIHISLSNVDADEAQEITINLGDTKAKKAIGEILTASKLTDYNSFEK
PNIVKPAPFKEVKINKGTMKVKLPAKSIVTLELQ