Protein Info for BACOVA_01125 in Bacteroides ovatus ATCC 8483

Annotation: ABC-2 type transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 419 transmembrane" amino acids 33 to 52 (20 residues), see Phobius details amino acids 194 to 219 (26 residues), see Phobius details amino acids 246 to 267 (22 residues), see Phobius details amino acids 282 to 303 (22 residues), see Phobius details amino acids 311 to 332 (22 residues), see Phobius details amino acids 373 to 391 (19 residues), see Phobius details PF12698: ABC2_membrane_3" amino acids 34 to 385 (352 residues), 191.8 bits, see alignment E=1.9e-60 PF01061: ABC2_membrane" amino acids 243 to 357 (115 residues), 33.6 bits, see alignment E=3e-12

Best Hits

KEGG orthology group: K01992, ABC-2 type transport system permease protein (inferred from 95% identity to bth:BT_3902)

Predicted SEED Role

"ABC-type multidrug transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (419 amino acids)

>BACOVA_01125 ABC-2 type transporter (Bacteroides ovatus ATCC 8483)
MKDIKLKDKIAQGINDLFYIWKREFQTTFRDQGVLIFFILVPLGYPLLYSFIYDNEVVRE
VPAVVVDDSHSSLSREYLRKVDATPDIQIVSYCADMEEAKQMLKNRRAYGIIYIPSDFSD
NIAKGKQTQVSIYCDMSGLLYYKSMLLANTAVSLDMNRDIKIARSGNTTDRQDEITAYPI
EYEEISIFNPTAGFAAFLIPAVLVLIIQQTLLLGIGLAAGTARENNRFKDLVPINRHYNG
TLRIVLGKGLSYFLVYILVAFYVLYVVPRLFSLNQIGQPSSLILFVVPYLAACIFFAMTA
SIAIRNRETCMLIFVFTSVPLLFISGISWPGAAIPPFWKYVSYIFPSTFGINGFVKINNM
GATLSEVAFEYKALWLQAGIYFLTTCWVYRWQILMSRKHAIERYKELKEKANLSKQISD