Protein Info for BACOVA_01070 in Bacteroides ovatus ATCC 8483

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 470 transmembrane" amino acids 24 to 48 (25 residues), see Phobius details amino acids 54 to 74 (21 residues), see Phobius details amino acids 83 to 106 (24 residues), see Phobius details amino acids 127 to 152 (26 residues), see Phobius details amino acids 166 to 192 (27 residues), see Phobius details amino acids 201 to 220 (20 residues), see Phobius details amino acids 258 to 278 (21 residues), see Phobius details amino acids 292 to 314 (23 residues), see Phobius details amino acids 326 to 345 (20 residues), see Phobius details amino acids 365 to 384 (20 residues), see Phobius details amino acids 392 to 414 (23 residues), see Phobius details amino acids 448 to 467 (20 residues), see Phobius details TIGR00770: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family" amino acids 38 to 468 (431 residues), 539.3 bits, see alignment E=3.9e-166 PF03605: DcuA_DcuB" amino acids 38 to 403 (366 residues), 514 bits, see alignment E=1.1e-158

Best Hits

Swiss-Prot: 56% identical to DCUB_HAEIN: Anaerobic C4-dicarboxylate transporter DcuB (dcuB) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K07791, anaerobic C4-dicarboxylate transporter DcuA (inferred from 96% identity to bth:BT_2756)

MetaCyc: 50% identical to N-(1-deoxy-D-fructos-1-yl)-L-aspartate transporter (Salmonella enterica enterica serovar Typhimurium str. LT2)
TRANS-RXN1R65-79

Predicted SEED Role

"Anaerobic C4-dicarboxylate transporter"

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (470 amino acids)

>BACOVA_01070 hypothetical protein (Bacteroides ovatus ATCC 8483)
MQKLFKDFFVVNRRKRKYKEKNHLSLFLNLKQQSMILQLAFVLTAIIIGARLGGIGLGVM
GGVGLAILTFVFGLQPTAPPIDVMLMIAAVISAASCMQAAGGLDYMVKLAEHLLRKNPSH
VTLLSPLVTYLFTFVAGTGHVAYSVLPVIAEVATETKIRPERPLGIAVIASQQAITASPI
SAATVALLGLLAGFDITLFDILKITIPATIIGVLVGALFSMRIGKELVEDPEYQKRLKEG
LFNNKKVEIKNVKNKRSAMISVIIFILATAFIVLFGSFEGMRPSFLIDGEIVTLGMSSII
EIVMLSAAAIILLVTKTDGIKATQGSVFPAGMQAVIAIFGIAWMGDTFLQGNMGQLTLSI
QGIVQQMPWLFGVALFVMSILLYSQAATVRALVPLGIALGISPYMLIALFPAVNGYFFIP
NYPTVVAAINFDRTGTTKIGKYVLNHSFMMPGLVSTVVAIALGLLFIQIF