Protein Info for BACOVA_00927 in Bacteroides ovatus ATCC 8483

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 557 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF13306: LRR_5" amino acids 358 to 473 (116 residues), 81.2 bits, see alignment E=3.2e-27

Best Hits

Predicted SEED Role

"Cell surface protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (557 amino acids)

>BACOVA_00927 hypothetical protein (Bacteroides ovatus ATCC 8483)
MKKIFSLLVLCATVVFASCSKDDPVTDPVPEGIVVTTYDALLNALQTGGTSADAPTLITL
GGNITIPAGGDYDTPPMNGSGHFKIDGGHHTLTWDNTASNRHLLGNFSPDAGAVYIELTN
INLDRQDMNAAVCVYNGKITLGKDVALSGQDDNMILANGEKAELELGDGCELSYETGSSP
CCVSVWYGATLVLNGGKTAAGAYIGLDCNFYPAVSYPLISVPKALTGDVHLLLKMIGTTP
VAQGIGNYQLTQADCDRLIVNPESTVGVYAGWGGKYDGNFELHLDPAADYQIKLRLKNFT
PPTSGTIDVTGMTDVVARATICAALEAGHTEIELKGELSKIGMGGQWGVFADNTQITKCD
LTEVTGWGATPTLPELAFKDCTALQEVTLPDGVQVIGEYAFIRCAALTTVNLSQVTQIDE
SAFRGCTSLKTLTLDNVAAIGLDAFYGCTGLETLKIPKCTRFGNYIVTGCKALTRIEAIA
AGDFVHISDGSSIERTAVFHNRTAHSGDNVFNPAKCDLVLNADKQEGGGAVPTVSANNEW
TVAQYGGLMRWKSITPP