Protein Info for BACOVA_00901 in Bacteroides ovatus ATCC 8483

Annotation: Alpha-L-rhamnosidase N-terminal domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 885 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF08531: Bac_rhamnosid_N" amino acids 167 to 339 (173 residues), 213.2 bits, see alignment E=4.7e-67 PF05592: Bac_rhamnosid" amino acids 347 to 458 (112 residues), 98.8 bits, see alignment E=3e-32 PF17389: Bac_rhamnosid6H" amino acids 463 to 789 (327 residues), 390.7 bits, see alignment E=1.3e-120 PF17390: Bac_rhamnosid_C" amino acids 793 to 866 (74 residues), 72.2 bits, see alignment E=4.9e-24

Best Hits

KEGG orthology group: None (inferred from 84% identity to bth:BT_2524)

Predicted SEED Role

"alpha-rhamnosidase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (885 amino acids)

>BACOVA_00901 Alpha-L-rhamnosidase N-terminal domain protein (Bacteroides ovatus ATCC 8483)
MKRLTLLPGLLFLMLQAAFSQESGSCKPVNLVCDYLVNPLGIDNPAPRLSWMLNDARKGA
RQTACQVIVDKDSLELIAGKGTIWDSGKKDSEQILITYSGQELRPFTKYYWRVNVWDKDG
VKSSSAINSFETGMMGMEHWQGAWISDNKDINYRPAPYFRKVFDARKKIRSARAYIAVAG
LYELYINGEKIGNHRLDPLYTRFDRRNFYVTYDITSQIQKGKNAIGVLLGNGWYNHQSMA
VWDFHRAPWRNRPAFCMDVRITYEDGSVEVVSTERDWKTSSGALIFNSIYTAEHYDARLE
QKGWNTVNFDDSKWNGVGYRAVPSQNVVSQQVQPIRAVETIPVKIWKKLNDTTYVFDFAR
NMAGVTRIKVSGEEGTVVRLKHGERLYDNGRVNTSNIDVYHRPVDNSDPFQTDILVLSGK
GEDEFMARFNYKGFRYVEVTSTNPLVLNENNLTAYFVHSDVPQKGMIHTSNALINRLWWA
TNNAYLSNLMGYPTDCPQREKNGWTGDGHFAIETALYNYDGITVYEKWLADHRDEQQPNG
VLPDIIPTGGWGYGTDNGLDWTSTIALIPWNIYMFYGDHKLLADCYENIKRYVDYVDRTS
PTGLTSWGRGDWVPVKSHSSKELTSSVYFYVDTKILANAAKMFNKTEDYKYYSALANKIK
NAINDKFLNRETGIYGSGVQTEQSVPLQWGIVPEELKRKVARNLAKQVEAAGFHLDVGVL
GAKAILNALSENGEAETAYKLAAQDTYPSWGCWIANGATTLLENWDLNATRDISDNHMMF
GEIGGWFYKGLGGIFPDPENPGFKHILLRPNFPSGLNELEARYQSPYGEICSKWERKKNR
IVYHVTVPANSTATFYAPDNVKGERAVKLEAGKHILELPIKRAVY