Protein Info for BACOVA_00885 in Bacteroides ovatus ATCC 8483

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1118 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF07660: STN" amino acids 53 to 103 (51 residues), 41.1 bits, see alignment 2.5e-14 TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 108 to 1118 (1011 residues), 662.8 bits, see alignment E=1.2e-202 PF13715: CarbopepD_reg_2" amino acids 109 to 192 (84 residues), 69.8 bits, see alignment 3.2e-23 PF13620: CarboxypepD_reg" amino acids 109 to 180 (72 residues), 51.5 bits, see alignment 2.2e-17 PF07715: Plug" amino acids 200 to 327 (128 residues), 42.9 bits, see alignment E=1.2e-14 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 304 to 332 (29 residues), 59.2 bits, see alignment (E = 2.6e-20)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1118 amino acids)

>BACOVA_00885 TonB-linked outer membrane protein, SusC/RagA family (Bacteroides ovatus ATCC 8483)
MREKRWLLCFLVAMCCTFSAWALPSQDKTVTLKLHNVSIETVLDAVKKQTGVNMLYNSQM
FKGVPSVSLDVKNERWDTTLKLVLNPQGFDYVMKDGIVVIRKQKRENRVRGMVTDSHGEP
IPGASIIVKGTRTGTSTNIEGEFTLDVKSDKVVLEVSFIGMKKQTVQVDATRRKTVEITL
VDDVKTLEDVVVTGYSNVRKSSFTGSSTQISGDDLRKVSQTNIIGAIQSFDPSFRLVDNV
QFGSDPNALPEMYIRGRSGFGVKELDKDQLSKSNLENNPNLPTFIMDGFEVSIEKVYDLD
PTRIESLTVLKDAAATAMYGSRAANGVVVITTVAPKAGEVRVSYNFTGTLEMPDLRDYNL
ANASEKLEIERLAGLFDKGQANIPSTAVGMNNYYKKYALIQKGVDTDWMSIPLQNSFNHK
HSIYLEGGTPNLRYGVDGSFNIADGVMKGTERNRYSAGFSLDYRIKNLQVRNYVSFGHTK
SKESPYGSFSDFSGLQPYDSPYKDDGTLREKLTYSKISGRDNNNPLYEATLGNYNWNSYD
EVIDNLSFNWYLNDYWTVKGQFSVTKKYSKSEKFIDPLSSKTSVTGSKDNNLAGDLYTTN
GESLDWNSNAFLYYTRSFNKQHNLNVSAGWEAASGTTESTNAHYRGFPSGEFHSLNYAAE
VYKKPTRTENTTRRVSVLASANYTWNDIYLVDASVRFDGSSEFGANQKWAPFFSGGLGVN
IHNYDFFKSNGYINKLKLRASYGRTGKVNFPAYAATTMYETLFDEWYITGYGAVLKALGN
KDLTWEKTDKLSVGIETKTFHDRLTVDFEYYYNKTIDLVNDVTLSQTSGFSTYKDNMGQV
ANKGVELKLRADIYRDRNWNVALWGNMAHNKNEILKISDSQKAYNERVAAYYKNEALYQE
TLGLSHGAEYSVPLPQYEEGASLTSIWAVRSLGIDPTTGKEIFLNRDGSIADKWNAAQEV
VVGNTEPKCSGAFGLNLSYKNWTLFASFLYEWGGQEYNQTLVNNVENADLVNKNVDLRVL
TDRWKKPGDIAQFKDIKDRGMTTLPTSRFVQDKALVRLNSLNVSYDFNRDWIKKHLRMNL
LRLEASTSDLINWSSIKQERGLSYPRSWKVEFSLKAQF