Protein Info for BACOVA_00767 in Bacteroides ovatus ATCC 8483

Annotation: 4Fe-4S binding domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 502 transmembrane" amino acids 7 to 31 (25 residues), see Phobius details amino acids 40 to 62 (23 residues), see Phobius details amino acids 101 to 127 (27 residues), see Phobius details amino acids 166 to 188 (23 residues), see Phobius details amino acids 195 to 215 (21 residues), see Phobius details PF12801: Fer4_5" amino acids 50 to 89 (40 residues), 50 bits, see alignment 1.2e-16 amino acids 175 to 211 (37 residues), 27.2 bits, see alignment 1.5e-09 PF12838: Fer4_7" amino acids 353 to 405 (53 residues), 27.2 bits, see alignment 2.2e-09 amino acids 437 to 485 (49 residues), 37.9 bits, see alignment 1e-12 PF13187: Fer4_9" amino acids 353 to 406 (54 residues), 27.4 bits, see alignment 1.4e-09 amino acids 437 to 485 (49 residues), 27.6 bits, see alignment 1.2e-09 PF13237: Fer4_10" amino acids 436 to 484 (49 residues), 26.8 bits, see alignment 2.1e-09 PF12797: Fer4_2" amino acids 465 to 485 (21 residues), 25.5 bits, see alignment (E = 4.6e-09) PF00037: Fer4" amino acids 466 to 485 (20 residues), 27.8 bits, see alignment (E = 8.3e-10)

Best Hits

KEGG orthology group: None (inferred from 86% identity to bth:BT_0963)

Predicted SEED Role

"Ferredoxin-type protein NapG (periplasmic nitrate reductase)" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (502 amino acids)

>BACOVA_00767 4Fe-4S binding domain protein (Bacteroides ovatus ATCC 8483)
MLRTIRLTTAIVCFTLITLLFLDFTGTLHTWFGWLAKIQFLPALLALNIGVVLFLVVLTF
LFGRIYCSVICPLGVFQDIVSWVSGKQKKNRFRYSPAMKWLRYGVLGVFIIMMVAGLNSL
AILLAPYSAYGRIASSLFAPVWQWGNNLLAYFAERVDSYAFYEVDVWIKSLSTMLIAIVT
LVVLFILAWRNGRTYCNTICPVGTVLGFISKYAIFKPVIDTSKCNSCGLCARNCKASCIN
PKAHEIDYSRCVTCMDCIGKCKHGAITYTRRKPKNETATSEDTKAKSVTTEQVDNARRSF
LSASAIFATTSVLKAQEKKVDGGLATIEDKKIPQRENPIYPPGALSARNFTQHCTACQLC
VSVCPNQVLRPSDNLLTLMQPEISYERGYCRPECTKCSEVCPAGAIHLTSLAEKSAIQIG
HAVWIKENCVPLTDGMECGNCARHCPTGAIQMVASDPEKTDSPKIPVVNVEKCIGCGACE
NLCPSRPFSAIYVTGHQMHRII