Protein Info for BACOVA_00729 in Bacteroides ovatus ATCC 8483

Annotation: tetratricopeptide repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 240 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF13431: TPR_17" amino acids 48 to 78 (31 residues), 25.4 bits, see alignment 5.1e-09 PF13374: TPR_10" amino acids 61 to 82 (22 residues), 15.2 bits, see alignment (E = 7.8e-06) PF13181: TPR_8" amino acids 96 to 128 (33 residues), 13.5 bits, see alignment 3.1e-05

Best Hits

KEGG orthology group: None (inferred from 83% identity to bth:BT_0905)

Predicted SEED Role

"BatC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (240 amino acids)

>BACOVA_00729 tetratricopeptide repeat protein (Bacteroides ovatus ATCC 8483)
MLKSKYILFAVFLLAAAGVSAQKAERDYIRKGNRLFNDSVFVDAEVNYRKALEANPKSTV
SMYNLGNTLSQQQKFQDAMEQYVSASKIEKDKMKLAHIYHNMGVIFQAGKDYAKAVDAYK
MSLRNNPTDHETRYNLALAQKMLKDQQNQQNQDQNQDQNKDQQKQDQKQDQNKDKQKDQK
QDEKKDQQQPPKSEKKQDNQMSKENAEQLLNSVMQDEKDVQDKVKKQQKVMQGGRLEKDW