Protein Info for BACOVA_00531 in Bacteroides ovatus ATCC 8483

Annotation: Tex-like protein N-terminal domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 710 PF09371: Tex_N" amino acids 12 to 190 (179 residues), 230.8 bits, see alignment E=3e-72 PF16921: Tex_YqgF" amino acids 313 to 435 (123 residues), 164.8 bits, see alignment E=3.7e-52 PF14635: HHH_7" amino acids 449 to 542 (94 residues), 46.6 bits, see alignment E=1.1e-15 PF12836: HHH_3" amino acids 476 to 540 (65 residues), 99 bits, see alignment E=4.1e-32 PF17674: HHH_9" amino acids 546 to 615 (70 residues), 92.7 bits, see alignment E=6.1e-30 PF00575: S1" amino acids 634 to 704 (71 residues), 67.4 bits, see alignment E=3.5e-22

Best Hits

KEGG orthology group: K06959, uncharacterized protein (inferred from 93% identity to bth:BT_1238)

Predicted SEED Role

"Transcription accessory protein (S1 RNA-binding domain)" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (710 amino acids)

>BACOVA_00531 Tex-like protein N-terminal domain protein (Bacteroides ovatus ATCC 8483)
MELFHKMISGFLGIPERQISSTLHLLGEGATIPFISRYRKEATGGLDEVQIEQIKEQHDK
LCDIAKRKETILGTINEQGKLTAELEKRINDTWNPTELEDIYLPYKPKRKTRAEVARQKG
LEPLATILMLQRENNLSTKAASFVKGDVKDVEDALKGARDIIAEQVNEDERARNTVRNQF
SRQAEISAKVVKGKEEEAAKYRDYFDFSEPLKRCTSHRLLAIRRAESEGVLKVSINPDDE
ACIERLERQFVRGNNECSQQVDEATVDAYKRLLKPSIETEFAAQSKEKADEEAIRVFTEN
LRQLLLAPPLGQKRVLAIDPGFRTGCKVVCLDAQGNLLHNENIYPHPPVNKTGEAASKLR
KMIEAYQIEAISIGNGTASRETEDFINSQSFDRQIPVFVVSEQGASIYSASKIARDEFPD
YDVTVRGAVSIGRRLMDPLAELVKIDPKSIGVGQYQHDVDQTKLKKALDQTVENCVNLVG
VNLNTASSHLLTYISGLGPQLAQNIVNYRAENGAFGSRKELMKVPRMGAKAFEQCAGFLR
IPGAKNPLDNTAVHPESYHIVEQMAKDLKCTIDELIADKELRRKINISAYITPTVGLPTL
QDILQELDKPGRDPRKAIKVFEFDKNVRTIADLREGMILPGIVGNITNFGAFVDIGIKEN
GLVHLSQLAERFISDPTEVVSIHQHVMVRVMNVDYDRKRIQLSMIGVQQD