Protein Info for BACOVA_00395 in Bacteroides ovatus ATCC 8483

Annotation: exonuclease SbcCD, C subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 955 transmembrane" amino acids 859 to 879 (21 residues), see Phobius details PF13476: AAA_23" amino acids 6 to 289 (284 residues), 75 bits, see alignment E=2.6e-24 PF13558: SbcC_Walker_B" amino acids 857 to 913 (57 residues), 39.9 bits, see alignment 8.2e-14

Best Hits

KEGG orthology group: K03546, exonuclease SbcC (inferred from 80% identity to bth:BT_0245)

Predicted SEED Role

"Exonuclease SbcC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (955 amino acids)

>BACOVA_00395 exonuclease SbcCD, C subunit (Bacteroides ovatus ATCC 8483)
MKILAIRLKNLTSIEGTVEVDFMAEPLHSAGIFAISGPTGAGKSTLLDALCLALYDKAPR
FATSVENVNLADVGDNQINQSDVRNLLRRGTSDGYAEVDFLGIDGRRYRSRWSVRRTRNK
INGSLQPQTLEVKELDTEKEFQGTKKELLIQLVELVGLTYEQFTRTVLLAQNDFATFLKS
KGAAKAELLEKLTGTGVYSRISQEVYARNKAAQEEVTLIQNRMNVIELMPEEELLALQKE
KELSTEKRAAGIKLLAEQNEQLNVVRSLKIQEELCKKKQQEEQEEQAREKVLQGALTSQE
EGLVHFKAQWEAIQPDLKKARQLDVQIQSQQSSYIQSQQILQAANRQVAEQEQKMRVAAE
QLQVSYSSLNRLLSHVGIEEALQLEQVEEILRQEENKLAAATSTNEERLLRLNSFGYPLL
AEEQVKLQKELTRQQNIRQLTETQTKAKTEIERLEKEVANCLKQLTEQETALKVTQRLYE
NARMAVGKDVKALRRQLQEGEACPVCGSTAHPYHQEQEVVDTLFRSIEQEYNVASTNYQQ
MNNRSIALQRDLAHQKTVDGQIAEQLAALYKAGIEAGNEEQIQHRLAELAIRILEYRNLY
AEWQRSDEEIKKMRAHCEALRENVSLCRLAMQKVSSAKEQLVILQNAASAELKRFEVIEK
ALNVLRQERSQLLKGKSADEAEAAVAKREKELNLALEKARKEVEAVHNRLSGLQGEMKQI
ALAIGELQEQYKKIESPELLPEIIKKQQEENLNIERALSTMEARLLQQAKNKLTVEQIAK
ELAEKQTVAERWAKLNKLIGSADGAKFKVIAQSYTLNLLLLHANKHLSYLSKRYKLQQVP
DTLALQVIDCDMCDEIRTVYSLSGGESFLISLALALGLSSLSSNNLKVESLFIDEGFGSL
DAESLRTAMEALEQLQMQGRKIGVISHVQEMSERISVQVQVHKKVNGKSVLTVVG