Protein Info for BACOVA_00369 in Bacteroides ovatus ATCC 8483

Annotation: integrase core domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 306 PF00665: rve" amino acids 121 to 219 (99 residues), 51 bits, see alignment E=2.3e-17 PF13683: rve_3" amino acids 208 to 273 (66 residues), 63.1 bits, see alignment E=2.3e-21

Best Hits

KEGG orthology group: None (inferred from 51% identity to pgi:PG2057)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (306 amino acids)

>BACOVA_00369 integrase core domain protein (Bacteroides ovatus ATCC 8483)
MRGSLQFLCDYFGITRQGYYKHVNRKMEIDILTSSIVLYCNELRKLMPKAGMRELYACCL
RKFGVRMVIGRDQCYNIFRANGLCQRVRRVRPKTTNSNHNYYIYPDLLNVTPKFVTDTFG
SMVVADITYVATCQGWAYLSLLTDAGSRAIVGYALCKTLEAEGPLKALRMAMDFYNRYNV
DLNNLIHHSDRGVQYCSNLYVGMLKKHHINISMTQCGDPLHNALAERMNNTIKNGWLFDC
TDDSFEQLDKRIADAIYAYNYVRPHQGIQMRTPMEYIRKCSGKVAEVPLVGTGAPAPILM
DYASEF