Protein Info for BACOVA_00292 in Bacteroides ovatus ATCC 8483

Annotation: putative DNA-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 172 PF18291: HU-HIG" amino acids 1 to 118 (118 residues), 62.8 bits, see alignment E=1.7e-21 TIGR01201: putative DNA-binding protein" amino acids 4 to 160 (157 residues), 83.2 bits, see alignment E=1e-27

Best Hits

KEGG orthology group: None (inferred from 54% identity to bhl:Bache_0695)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (172 amino acids)

>BACOVA_00292 putative DNA-binding protein (Bacteroides ovatus ATCC 8483)
MAIRFKRVQRLCDPTNKEAGKKVYPVISYQYDTSATLDEFAKEISSTSGVSEGETISVLK
DFRTLLRKTLLSGRSVNIKGLGYFFLSAQSKGTEKAEDFTVSDISGLRVCFRANSDIRLF
TGTSTRSDGLKFKDLDHINDSSIIDGDSGEGGEAPDPDGGAGGNGEAPDPAA