Protein Info for BACOVA_00189 in Bacteroides ovatus ATCC 8483

Annotation: AMP-binding enzyme

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 456 transmembrane" amino acids 174 to 199 (26 residues), see Phobius details PF00501: AMP-binding" amino acids 18 to 327 (310 residues), 118.5 bits, see alignment E=3.3e-38 PF13193: AMP-binding_C" amino acids 375 to 444 (70 residues), 34.2 bits, see alignment E=4.1e-12

Best Hits

KEGG orthology group: None (inferred from 60% identity to hmr:Hipma_1648)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (456 amino acids)

>BACOVA_00189 AMP-binding enzyme (Bacteroides ovatus ATCC 8483)
MAYFNCKKEFVMNWLVEKMKEDGSKNAIIFKGKEYTYEALVEQIEDYYIIISKQINRGEI
VSIISDYSFQSIALFLALYENRNIIVPITTKINQEIVDRIRVANSDYRIEIDDKLNIYKT
TEKTEDHPLVIRLQEYHHSGLILFSSGSTGAPKAMIHNLDNLVDSYKGKRGKNIVFLIFL
MFDHIGGLNSLLNCLSMGVTMVFPEHREPEHVAELIEKYKVNILPASPTFLNLMLISESN
SGYNMSSLRMITYGTEPMPDSLLLKLKTAFPRVKFLQTFGTSETGISQTTSRSSDSTFLK
IDDPNTEIKIVKGELWIRSKTQVMGYLNSSMERFTEDGWFKTGDLVEEASDGYIKIVGRS
KELINVGGEKVLPSEVESVLFQIPNLVDCIVYGEKNFITGMIVVAKVLFKEPLKPSEAKK
QIVQFCNGKLDRYKIPAKVILMTESEYSERFKKKRL