Protein Info for BACOVA_00156 in Bacteroides ovatus ATCC 8483

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1114 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 123 to 1114 (992 residues), 720.7 bits, see alignment E=4e-220 PF13620: CarboxypepD_reg" amino acids 123 to 191 (69 residues), 40.6 bits, see alignment 5.5e-14 PF13715: CarbopepD_reg_2" amino acids 124 to 204 (81 residues), 61 bits, see alignment 1.8e-20 PF07715: Plug" amino acids 214 to 336 (123 residues), 69.7 bits, see alignment E=6e-23 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 312 to 342 (31 residues), 52.8 bits, see alignment (E = 2.6e-18)

Best Hits

KEGG orthology group: None (inferred from 68% identity to bth:BT_1280)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1114 amino acids)

>BACOVA_00156 TonB-linked outer membrane protein, SusC/RagA family (Bacteroides ovatus ATCC 8483)
MLQNYTFIADKRGVRRSFLLFFSLFLLQVTAFAQNDVRITIRENNITVIEALKKVEKQSG
LSIGYNNSLLRDKPALNLNLDKAGLDYSLSTILKGTGCTYELKGKYIKIIPQPAQEKPSS
DKQIKGKVTDETGEPLIGVNIQVQGSASGVITDIEGRYSIEAPVGSTLNFTYIGYTPQNV
KVTDRSVYNVTLATAVEQLNEVVVTALGIKREQKALSYNVQQVKADEISGIKDANFINSL
NGKVAGVTINSSSSGVGGASKVVMRGAKSIEQSSNALYVIDGIPMYNFGGGGGMEFDSRG
ATESIADINPDDIESISVLTGAAAAALYGSNAANGAIVITTKRGQVGKLQVTVNSNTEFA
RPFVLPEFQNRYGTGSRGKDGGSTILSWGAKLNDASRTNYEPKDFFDTGLIFTNSVTLST
GTEKNQTFFSVASVNSEGIVPNNRYNRFNFTFRNTTNFLNDRMKLDIGASYIIQNDRNMT
NQGIYSNPIVPVYLFPRGDDFGLVKVFERWDPARKINTMFWPQGEGDYRMQNPYWIAYRN
LRLNQKKRYMLSAQLSYDITDWLNISGRVRVDNTHTKYEQKLYASSNLTITEESTQGHYT
ISKPDETQTYADVLANINKRFNDFSLVANVGASIVNNRYEDLSYRGPIREKGIPNVFNVF
DLDNTKKKARQDEWQEQTQSVFASVEVGWKSMLYLTLTGRNDWASQLANSSTPCFFYPSV
GLSGVISEMLTLPEFIDYMKVRGSFSSVGMPYPRNLTSPTYEYDEANQQWKPKTHYPIKD
LKPERTNSWELGLDMRLFKDFSLGFSWYLANTFNQTFDPKVSVSSGYSKIYLQTGYVRNS
GVELSLGYGHTWNNHLHWESNFTLSHNKNTIKDLVTSYIHPETGLPITQNRLDVGGLGKA
RFILKKGGTLGDLYTQSDLKRDNSGMVEIDPSGALTTEDNLPDIKLGSVFPKANLAWNNR
FEWRGISLSALFTARIGGIAYSATQAAMDQYGVSERSAQARDNGGVLLNGRTLVDAQTYY
SLIGNSSGLPQYYTYSATNVRLQEASVGYTIPRKWLGGVCDINVSVVGRNLWMIYCRAPF
DPEAVANTGNYYQGIDNFMLPSTRNIGVNVKINF