Protein Info for B158DRAFT_2536 in Kangiella aquimarina DSM 16071

Annotation: Uncharacterized protein involved in response to NO

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 399 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 61 to 79 (19 residues), see Phobius details amino acids 90 to 109 (20 residues), see Phobius details amino acids 115 to 133 (19 residues), see Phobius details amino acids 145 to 164 (20 residues), see Phobius details amino acids 176 to 200 (25 residues), see Phobius details amino acids 212 to 233 (22 residues), see Phobius details amino acids 239 to 259 (21 residues), see Phobius details amino acids 271 to 294 (24 residues), see Phobius details amino acids 306 to 325 (20 residues), see Phobius details amino acids 337 to 359 (23 residues), see Phobius details amino acids 371 to 389 (19 residues), see Phobius details PF05940: NnrS" amino acids 14 to 393 (380 residues), 367.8 bits, see alignment E=4.2e-114

Best Hits

KEGG orthology group: K07234, uncharacterized protein involved in response to NO (inferred from 90% identity to kko:Kkor_1086)

Predicted SEED Role

"NnrS protein involved in response to NO" in subsystem Denitrification or Nitrosative stress or Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (399 amino acids)

>B158DRAFT_2536 Uncharacterized protein involved in response to NO (Kangiella aquimarina DSM 16071)
MQILDSQKENAIWPLFRLGFRVFFLGGALVATVTMVLWLLFLTGHNYLPGIQNSVWWHAH
EMLFGFTLAIIAGFVLTAMQNWTGIPGVRGWPLAIASCLWFLPRILLPALGETNWLVMTL
DIAWLPLIAIFLARPVIQVRQWRNLFFVPLMLLFTILNGLSYYAAHINDWLLSERIFITA
VLAITALITVMGGRVIPFFTSRATNTDKPMPILALEWVCLGSIWLSTFAWLLLPRSESMN
MIVASLMILAAVTNIVRILRWKTIAALKVPLLWILHLGYWFIPIGLLIFASALLEQTTTY
SNASHFLTAGALGSVVLGMIARVSLGHSGRPLQPSKWMTVAFAIVLLAGLIRGFTALVAP
NYLADSYQASGVLWVVAYGLFVIFYWPVLTKPRIDGRPG