Protein Info for B158DRAFT_2424 in Kangiella aquimarina DSM 16071

Annotation: 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 344 PF18152: DAHP_snth_FXD" amino acids 1 to 66 (66 residues), 60.6 bits, see alignment E=1.6e-20 TIGR01361: 3-deoxy-7-phosphoheptulonate synthase" amino acids 71 to 326 (256 residues), 383.8 bits, see alignment E=1.9e-119 PF00793: DAHP_synth_1" amino acids 93 to 326 (234 residues), 262.6 bits, see alignment E=4.3e-82 PF03102: NeuB" amino acids 143 to 334 (192 residues), 41.2 bits, see alignment E=2.1e-14

Best Hits

Swiss-Prot: 52% identical to AROF_THEMA: Phospho-2-dehydro-3-deoxyheptonate aldolase (aroF) from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)

KEGG orthology group: K03856, 3-deoxy-7-phosphoheptulonate synthase [EC: 2.5.1.54] (inferred from 96% identity to kko:Kkor_1648)

Predicted SEED Role

"2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54)" in subsystem Chorismate Synthesis or Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate) (EC 2.5.1.54)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.5.1.54

Use Curated BLAST to search for 2.5.1.54

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (344 amino acids)

>B158DRAFT_2424 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) (Kangiella aquimarina DSM 16071)
MIIILRPDASEQDAQEILQKIDTAGLKPLHMPGIERTVIGALGDERVLESLHLENLPQVD
MVKPVLSKYKLVSREIYAQDTVVQVGNTPVGSEQFAIMAGPCAIESEEQLLETARYVKNA
GATVLRGGAFKPRTSPYSFQGLGVEGLKIMSQVGKEVGLDTITELMDVKDLDDVARYISA
IQIGARNMQNYTLLKAVGETQKPVLLKRGLSATIEELLLAAEYIVASGNPNVMICERGIR
TFETATRNTLDLNAVAFIKERSHLPVIVDPSHGTGVRTLVSPMAKAAVACGADGVIVECH
RSPKESVSDAAQALSPQDFHNLMQQLAPFVTASGRTLAEVARAS