Protein Info for B158DRAFT_2423 in Kangiella aquimarina DSM 16071

Annotation: ATPases involved in chromosome partitioning

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 236 PF13614: AAA_31" amino acids 4 to 53 (50 residues), 38.6 bits, see alignment 2.2e-13 amino acids 69 to 141 (73 residues), 31.4 bits, see alignment E=3.6e-11 PF07015: VirC1" amino acids 4 to 184 (181 residues), 48.3 bits, see alignment E=1.7e-16 PF09140: MipZ" amino acids 5 to 155 (151 residues), 27.1 bits, see alignment E=5e-10 PF01656: CbiA" amino acids 6 to 134 (129 residues), 38.2 bits, see alignment E=2.6e-13

Best Hits

KEGG orthology group: K03496, chromosome partitioning protein (inferred from 95% identity to kko:Kkor_1649)

Predicted SEED Role

"Chromosome (plasmid) partitioning protein ParA" in subsystem Bacterial Cytoskeleton or Plasmid replication or Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (236 amino acids)

>B158DRAFT_2423 ATPases involved in chromosome partitioning (Kangiella aquimarina DSM 16071)
MRAKVISFVQMKGGAGKTTLCANIASTLSDKSKVLMIDTDHPQSSLETWYRVRDEQYLIE
NMDVISAKNLAHLQKQVRENTDLYDYILIDGHPRITNLTRAVVLLSDLALIPLSPSPIEV
WSTKHLAEIVDEAKAMNPNLEARICWNRYRVRTNSADNVVSNAKQELGLEDFPTKLGNRV
AYLDSFAEGLTVAEWHDPAAKLEIWSLTSNIERLISQLPKSRLKTENQVDKFAKGK