Protein Info for B158DRAFT_2225 in Kangiella aquimarina DSM 16071

Annotation: Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 235 PF00005: ABC_tran" amino acids 21 to 167 (147 residues), 128.5 bits, see alignment E=3e-41

Best Hits

Swiss-Prot: 55% identical to YBBA_ECO57: Uncharacterized ABC transporter ATP-binding protein YbbA (ybbA) from Escherichia coli O157:H7

KEGG orthology group: K02003, (no description) (inferred from 91% identity to kko:Kkor_0791)

MetaCyc: 47% identical to lipoprotein release complex - ATP binding subunit (Escherichia coli K-12 substr. MG1655)
RXN-22427

Predicted SEED Role

No annotation

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (235 amino acids)

>B158DRAFT_2225 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component (Kangiella aquimarina DSM 16071)
MLTTNNLTKTVKLPEQSLTILSEVSLTVNEHDSVAIVGASGSGKSTLLSLLAGLDTPSEG
EVELAGHPIHKLSEDERAAVRAQYVGFVFQSFHLLPGLTALENVMLPIELKEDKNAQTKA
KELLEKVGLAERLNHYPHQLSGGEQQRVAIARAFASEPKILFADEPTGNLDTANGEKIID
LIFDLNQQLGTTLVLVTHDDRLAERCQRLVRLEAGKVIEDSVNESFEQAKTAETA