Protein Info for B158DRAFT_2092 in Kangiella aquimarina DSM 16071

Annotation: Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 228 transmembrane" amino acids 7 to 24 (18 residues), see Phobius details amino acids 32 to 50 (19 residues), see Phobius details amino acids 58 to 78 (21 residues), see Phobius details amino acids 109 to 129 (21 residues), see Phobius details amino acids 150 to 173 (24 residues), see Phobius details amino acids 185 to 204 (20 residues), see Phobius details PF09997: DUF2238" amino acids 41 to 188 (148 residues), 179 bits, see alignment E=2.3e-57

Best Hits

KEGG orthology group: K08984, putative membrane protein (inferred from 87% identity to kko:Kkor_0659)

Predicted SEED Role

"FIG00761799: membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (228 amino acids)

>B158DRAFT_2092 Predicted membrane protein (Kangiella aquimarina DSM 16071)
MTYNTKFLLTLSGIFLVVFILCAINPVDRSTWLLENVLMFLLVAGLIASYKRFRLSRISY
FCIFLFLCFHEIGSHYTYSLVPYNQWTESVFGSPLNDWFGWERNHYDRFLHLAYGLLFAY
PIREIFIRIVKVKGFWGYFLPLDLTLSTSAIYELIEWAAAIVFGGDVGAAYLGTQGDVWD
AHKDMALAGLGALIAMVTVAFINWRWQRDFAREWNESLTPQTSNPETL