Protein Info for B158DRAFT_1891 in Kangiella aquimarina DSM 16071

Annotation: LSU ribosomal protein L6P

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• TIGR03654: ribosomal protein uL6
  • amino acids 2 to 175 (174 residues), 254.1 bits, E=3.1e-80
• PF00347: Ribosomal_L6
  • amino acids 11 to 81 (71 residues), 59.5 bits, E=2.2e-20
  • amino acids 89 to 163 (75 residues), 88.2 bits, E=2.5e-29

Best Hits

Swiss-Prot: 67% identical to RL6_HYDCU: 50S ribosomal protein L6 (rplF) from Hydrogenovibrio crunogenus (strain XCL-2)

KEGG orthology group: K02933, large subunit ribosomal protein L6 (inferred from 98% identity to kko:Kkor_0452)

MetaCyc: 63% identical to 50S ribosomal subunit protein L6 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"LSU ribosomal protein L6p (L9e)" in subsystem Ribosome LSU bacterial

Protein Sequence (176 amino acids)

>B158DRAFT_1891 LSU ribosomal protein L6P (Kangiella aquimarina DSM 16071)
MSRVAKSAVSIPSGVEVNIKDGVISVKGSKGQLEQALHSDVELKVEDGEITFAPSAGAES
WAMAGTYRALVNNMITGVTNGFEKKLQLVGVGYRAQVQGKKLNLSLGFSHPVEFEAPEGI
TIEAPSQTELLVKGADKQVVGQVAANIRAYRPPEPYKGKGVRYADERIVRKEAKKK