Protein Info for B158DRAFT_1874 in Kangiella aquimarina DSM 16071

Annotation: GTPases - translation elongation factors

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 144 PF00009: GTP_EFTU" amino acids 10 to 83 (74 residues), 84.3 bits, see alignment E=8.2e-28 PF03143: GTP_EFTU_D3" amino acids 77 to 142 (66 residues), 73.3 bits, see alignment E=1.9e-24

Best Hits

Predicted SEED Role

"Translation elongation factor Tu" in subsystem Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (144 amino acids)

>B158DRAFT_1874 GTPases - translation elongation factors (Kangiella aquimarina DSM 16071)
MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAICTVLAKVYGGSARAFADIDNAPEEKERG
ITISTSHVEYETPNRHYAHVDCPRTTDVTGAVELPEGVEMVMPGDNIKMNVELIAPIAMD
EGLRFAIREGGRTVGAGVVAKIIE