Protein Info for B158DRAFT_1796 in Kangiella aquimarina DSM 16071

Annotation: uncharacterized domain HDIG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 405 transmembrane" amino acids 123 to 141 (19 residues), see Phobius details PF11871: DUF3391" amino acids 5 to 118 (114 residues), 79 bits, see alignment E=1e-25 PF13487: HD_5" amino acids 144 to 304 (161 residues), 97.5 bits, see alignment E=1.5e-31 TIGR00277: HDIG domain" amino acids 149 to 242 (94 residues), 37.1 bits, see alignment E=1.1e-13 PF08668: HDOD" amino acids 149 to 207 (59 residues), 24.3 bits, see alignment E=4e-09 PF01966: HD" amino acids 151 to 273 (123 residues), 65.4 bits, see alignment E=1.1e-21

Best Hits

KEGG orthology group: None (inferred from 92% identity to kko:Kkor_1144)

Predicted SEED Role

"HDIG domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (405 amino acids)

>B158DRAFT_1796 uncharacterized domain HDIG (Kangiella aquimarina DSM 16071)
MSLKVKIPADSLQLGMYVVELDRPWLDVPLMFQKFMIKREVELKTLKEYCQYVYIEVDEQ
FWSLQKDKLKAKAKTAPLPENTPLHHELKRAHGTYEAAREEAINLFELAKMGMKLDISHT
RRIIQSCMISVMSNANALFWLTRIKDKSQFTAEHSVRVAILAIALGKYLKLDEQQLELLG
LCGMLHDLGKTQIPEEIVDKPCQLTEVELRVMQKHTILGYELVNSDHSINSTVKDVIKNH
HAHIDGTGYPKLPAEQISFYCRIISIVDAYDTMTSDTCYSRSSSARDALKELFNQRNKQF
DGELVEAFIRMLGIYPPGTLVEMSNGEVGIVISTHPEKKLKPKVELVRDSEGKLRKSLII
DLSKSPSDKSGMRYSIKRPLADGAMGFDMRSYIQQTHHIQSNNQR