Protein Info for B158DRAFT_1771 in Kangiella aquimarina DSM 16071

Annotation: ribonuclease, Rne/Rng family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 937 TIGR00757: ribonuclease, Rne/Rng family" amino acids 14 to 424 (411 residues), 544.9 bits, see alignment E=6.3e-168 PF00575: S1" amino acids 37 to 118 (82 residues), 47.7 bits, see alignment E=2.5e-16 PF10150: RNase_E_G" amino acids 121 to 390 (270 residues), 330.4 bits, see alignment E=1.4e-102 PF20833: RNase_E_G_Thio" amino acids 402 to 486 (85 residues), 108.5 bits, see alignment E=2.3e-35

Best Hits

KEGG orthology group: K08300, ribonuclease E [EC: 3.1.26.12] (inferred from 79% identity to kko:Kkor_1169)

Predicted SEED Role

"Ribonuclease E (EC 3.1.26.12)" in subsystem RNA processing and degradation, bacterial or Ribosome biogenesis bacterial (EC 3.1.26.12)

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.1.26.12

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (937 amino acids)

>B158DRAFT_1771 ribonuclease, Rne/Rng family (Kangiella aquimarina DSM 16071)
MRRMLINATNHHEELRVALVDGQRLYDLDIELAGREQKKGNIYKGKVTRIEPSLEAAFVD
YGAERHGFLPLKEVAREYMHNAPSRGRPTIKDALKEGQEIIVQIDKEERGNKGAALTTSI
SLAGSYLVLMPNNPRAGGISRRIEGEERAELKQVMSQLPVPNGMGCIVRTAGIGKSLEEI
QYDFNYLIDTWNGIKQVAGTRPAPFLITQESDVITRAIRDYLRPDIGEIIIDRQEVYERV
KTELQYQRPDFVNKVKLYRDEIPLFNRYQVESQIESAFQREVRLPSGGSVVFDQTEALLS
IDINSARATKGGDIEETALHTNVEAAEEIARQLRLRDIGGLIVIDFIDMGPPRNQREVER
VLKESVARDRARIQIGRISRFGLLEMSRQRLRPSLEESSQHVCPRCTGSGVIRGTDSLAL
SILRLMEDEAMKESTAEVQALVPVEVATFLLNEKRRKIEQIEKRQKVRLVVVPNPYLETP
HYEVLRVKAGETLEDASYSLIGDAPQVELVRSSTQAAPASDQPALKGVKPTTPPPAPSKP
VKKKKPGLFKRLWTALFGDSDDKKKKTKKSQNNRGKYDRNNRGRNNRYQGKKRNNQKGRN
QNRNQQQEQRDDKEKPQQKSGGRPQKKQQDKPQRKQQAAHKQEPKHEQKKEQQPEAKRPP
RKTRAERMAEAQQGNKPAQEQQSSPNKEQAQQQKKPSVRSAIKGKQPQAEVAESKPATKQ
GKTGNEKPAKERTPKSKAQAEDIIVYKAHKSLERSITDVMGYTKDKKASNVEPDAPAQQA
ANDSNIEQSTSSKPKAASEQVKAEPVAKTLDAETVEPFVNKDVEAANEKPQPSSDIQQEA
NLAKPSPENDDNAKSNASKAESDSSQSTENLVAKKHESTHASAPMAKAVTTDTVVSAAFT
PKPYQFSDSDIITSDIEDSSDKHSNSPAAKTSSLSDA