Protein Info for B158DRAFT_1634 in Kangiella aquimarina DSM 16071

Annotation: Outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF02321: OEP" amino acids 29 to 201 (173 residues), 55.6 bits, see alignment E=3.2e-19 amino acids 228 to 390 (163 residues), 53.2 bits, see alignment E=1.7e-18

Best Hits

KEGG orthology group: None (inferred from 98% identity to kko:Kkor_1262)

Predicted SEED Role

"Heavy metal RND efflux outer membrane protein, CzcC family" in subsystem Cobalt-zinc-cadmium resistance

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (410 amino acids)

>B158DRAFT_1634 Outer membrane protein (Kangiella aquimarina DSM 16071)
MKKLSVSYAMCAVIYLLSASAQAQPVDWERWLASQIKQHPDIIAAREQLQGSEATADAAE
QPLYNPELSSELEQVGEENNYRVGVSQTVDWWDRRGAKQQQAAFIRQAAKAQYQQQVMSK
TAEALSALVEWRASNQAAIIAQAQKEQLNALLQVAEKRQKAGDIGTIDAELTFLSLSKQL
AQVAELEVALQKAESRVRELLPQWTPEKGGIPEDFWPSEPVSITDQELLQHPYVASAQAR
WKSIKEEAEATRRAAKAEPTFGVNAGRDGGENTVGLTFSIPLNVRNDYSAETRVANRAAL
EAEARFLAVYRNLRFDWQAAQAAWKRYDEQYRRWLELARGRVENSADLLERQWRSGDLST
TDYLLALNQRSESLLAGISLEKHTQLALTEVLLHSGQLRAVAPTATKPLN