Protein Info for B158DRAFT_1462 in Kangiella aquimarina DSM 16071

Annotation: Fe-S protein assembly co-chaperone HscB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 177 TIGR00714: Fe-S protein assembly co-chaperone HscB" amino acids 18 to 175 (158 residues), 106.1 bits, see alignment E=9.4e-35 PF07743: HSCB_C" amino acids 93 to 169 (77 residues), 57.2 bits, see alignment E=1.8e-19

Best Hits

Swiss-Prot: 42% identical to HSCB_ALISL: Co-chaperone protein HscB homolog (hscB) from Aliivibrio salmonicida (strain LFI1238)

KEGG orthology group: K04082, molecular chaperone HscB (inferred from 86% identity to kko:Kkor_1503)

Predicted SEED Role

"Chaperone protein HscB" in subsystem Protein chaperones

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (177 amino acids)

>B158DRAFT_1462 Fe-S protein assembly co-chaperone HscB (Kangiella aquimarina DSM 16071)
MTKAQQNYFEIFGLEPNFSIDVPKLSSKLRALLNSVHPDRFASSGSQQQMLSMQKTTQLN
DAFAVLKNPVKRAQYLLHLKTGIDTSKEHTVNDPEFLMQQLELREELEDISASSDISQLN
QFADKISELEEVQEQQMAELFLQKPLDTDELQKAIYKLQFLHKTLSDIEQAEDKLLS