Protein Info for B158DRAFT_1244 in Kangiella aquimarina DSM 16071

Annotation: Rhombo-CTERM domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1530 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 1505 to 1523 (19 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 572 to 645 (74 residues), 52.6 bits, see alignment 7.4e-18 PF03160: Calx-beta" amino acids 1404 to 1469 (66 residues), 45.2 bits, see alignment (E = 1.3e-15) TIGR03501: GlyGly-CTERM domain" amino acids 1505 to 1526 (22 residues), 17.6 bits, see alignment (E = 2.5e-07)

Best Hits

KEGG orthology group: None (inferred from 78% identity to kko:Kkor_1728)

Predicted SEED Role

"Na-Ca exchanger/integrin-beta4"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1530 amino acids)

>B158DRAFT_1244 Rhombo-CTERM domain (Kangiella aquimarina DSM 16071)
MSKSNSTLVRLCIAGLLSTTAMFGGNNIAEAAGSDSVKVVLSKPKLSKPLTTVAKPLPEV
TNARKYKLRQSGEKIPGVDLIREVPNQNHPFADELLLRNTDFEKDPVLQKNQANDKFAPL
LPALGTGFDGMSNVTGAVPPDTVADVGPNHIVQMVNSALAIWDKEGNQLAGPIAINQLWS
GFGGLCESTNRGDPIVLYDSAADRWMLSQFAFTDGFTDNRECIAISQTNDPTGAYYLYDF
AYSTTKFNDYPHFGVWTDAYYMGVNQFLAPNLNYAGAGVVAYERDKMLAGQPAQQVIIDL
ENLYPNAFTPMPADIDGTYLPPEGMPGYFITSGGSNTMDIYTFDVDWSNPANSSFSLKNS
VTVADFDGGVCSYARDCIVQPNGQKLDAIGQRMMFRLAYRLLNGTEHKLVANHNVVGSDS
DTNIAGVRWYEFDLDPVTGQASVANQGTYNPDDGNSRWMGSAAMDAAGNIGVAYSVSGPA
TYPSIRFSGRYKDDPVDVLTVPEQVLKAGEGAQSGANRWGDYSSLSVDPADDCTFWYTTE
YYKAANDNSAAWSTYIGSFKFDNCVAGPKGYIEGTVTDSSGSPIEGVRVAAGGSTAMTDA
SGNYSLTLPADSTYDLDFTKYGYLPADVDGIALAEDEVEAVDVSLDNAAAITVSGVVTDG
SGLGTPLYAEVSITAPGVTLSTFTDPVTGQYSLEAYEGTLVKIEATAIDAGYLKESYDIL
PENTPVRDFALQVDSNCTAEGYVWNTFFEGFDSGVPPEGWSVEDINDTGMVWQAASTAPK
GNLLNVSGEAAAIDSDAAGSGVVVSSTLTSPVINVADIDSTTLNFVSLFRTFAGGDVYTL
DINVDNAGWVSVYDFVATGTADNISIDLSTELSGATSFQIRFAYEANYEWYAYLDNVAFG
TPNCIADTGYFASGYVVDANTQEPINGATINSDSKTVTTVATIDDDQLGDGFYRIFVGSG
DTTEVDVSANNYQGKTIDLTQYDLNQAIALDAGMLELGSVEFEVAESLEQSVQTSLENLG
NADANYELSLFIVREEAEAAKPYGVFDQATRRFGPKALQEFDTKKIRYRSYAPSAPEVNV
EFVAQFPTELTLGWGIGFDKTSSDIWVGDVTAGGAPLDALHKYTDGVKTGDFIDTSAVTV
GYAADLAYNARTKSFWQVSVSNNTCIHEIDPVAQVVTGNKICPAFGTSQRGLAYDPISGT
FYSGSWNDSVIHQFDAEGNILRSINVDLAVSGLAFNPVTNHLFVMSNDAPGSIEPDIVVL
DASTSELDPIGLIYIPSVDTDDDGVTEDLMDGGQAGLAIDCDGNLWAVNQSRQTVVGITS
GESNVCEITPKWISLAGDSGLVEANQVSELEFQVSTLELPVGNYQAQVILDNDTPYGTIS
KPVSLTVREPQFGVFNVSANSGSIRNGGDIQVTISRIDGADHQVSVDYATADGTAAAGTH
YTATSGTLTWANGETEDKIITVSTIDTEQSSDLTLSFQLSNAQKAELGTSQVSLSIEKDP
PKRGGGGSTGFVILALLVLAGLARRKKYLS